Factsheet for Zm00001d022337_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36812	Sorghum	plastid	89.84	90.2
Os01t0555800-01	Rice	plastid	41.8	88.43
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	47.66	78.71
TraesCS3D01G205000.1	Wheat	plastid	76.95	77.25
TraesCS3B01G234300.1	Wheat	plastid	76.95	76.36
HORVU3Hr1G047870.3	Barley	plastid	76.56	75.68
TraesCS3A01G204000.1	Wheat	plastid	76.17	75.58
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	34.77	62.24
KRH09750	Soybean	cytosol, mitochondrion	52.73	60.54
KRH44431	Soybean	mitochondrion	58.2	59.13
KRH33613	Soybean	cytosol	31.64	59.12
CDY39642	Canola	mitochondrion	53.91	57.26
CDX81711	Canola	mitochondrion	57.03	57.03
CDY55984	Canola	mitochondrion	56.64	56.42
Bra026766.1-P	Field mustard	mitochondrion	56.64	55.98
Bra026135.1-P	Field mustard	mitochondrion	56.25	55.17
CDY36556	Canola	mitochondrion	55.47	54.62
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	58.98	54.51
PGSC0003DMT400077039	Potato	mitochondrion	58.59	54.35
Solyc07g015860.2.1	Tomato	plastid	57.03	52.71
AT1G15390.1	Thale cress	plastid	55.08	52.42
Zm00001d011445_P006	Maize	mitochondrion	24.61	23.86

Protein Annotations

EntrezGene:100272955	MapMan:17.7.6.1	Gene3D:3.90.45.10	UniProt:B4FRX0	EMBL:BT039858	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009505	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030312	GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821
HAMAP:MF_00163	ProteinID:ONM60144.1	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11
InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	SignalP:SignalP-noTM	TIGRFAMs:TIGR00079	UniParc:UPI00017B7AA6
EnsemblPlantsGene:Zm00001d022337	EnsemblPlants:Zm00001d022337_P002	EnsemblPlants:Zm00001d022337_T002	SEG:seg	:	:

Description

Peptide deformylase 1A chloroplastic/mitochondrial

Coordinates

chr7:+:175701787..175703112

Molecular Weight (calculated)

27273.2 Da

IEP (calculated)

8.841

GRAVY (calculated)

-0.009

Length

256 amino acids

Sequence
(BLAST)

001: MVGLLRPLSA AATLLLAPAT PLTGSSVSAS SVGGRRWRSV RADAGGGWLS GLLGGKGGGA STAMMVTPGT VKAGDPVLHE PAQEVAPGDV LSEKVQGVID
101: RMVDVMRRAP GVGLAAPQIG VPLRIIVLED TQEYISYAPK KDIEAQDRRP FDLLVIINPK IKSTSKRTAL FFEGCLSVDG YRAVVERHLD VEVSGLDRNG
201: STMKVRASGW QARILQHECD HLEGTLYVDK MVARTFRVVE NLDLPLPTGC PQLGAR

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.