CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026135.1-P	Field mustard	mitochondrion	97.69	97.32
CDY39642	Canola	mitochondrion	81.15	87.55
CDY55984	Canola	mitochondrion	81.15	82.1
CDX81711	Canola	mitochondrion	80.38	81.64
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	46.54	78.06
AT1G15390.1	Thale cress	plastid	78.85	76.21
Os01t0555800-01	Rice	plastid	32.69	70.25
KRH33613	Soybean	cytosol	34.62	65.69
KRH44431	Soybean	mitochondrion	61.92	63.89
PGSC0003DMT400077039	Potato	mitochondrion	65.77	61.96
Solyc07g015860.2.1	Tomato	plastid	65.38	61.37
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	65.38	61.37
KRH09750	Soybean	cytosol, mitochondrion	52.31	60.99
KXG36812	Sorghum	plastid	55.38	56.47
Zm00001d022337_P002	Maize	plastid	54.62	55.47
TraesCS3D01G205000.1	Wheat	plastid	54.23	55.29
TraesCS3B01G234300.1	Wheat	plastid	54.62	55.04
TraesCS3A01G204000.1	Wheat	plastid	54.23	54.65
HORVU3Hr1G047870.3	Barley	plastid	53.85	54.05
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	20.0	36.36
CDX69568	Canola	plastid	24.23	22.66
CDY09874	Canola	plastid	23.85	22.55

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:A0A078HFN3	UniProt:A0A078HFN3	EnsemblPlants:CDY36556	ProteinID:CDY36556
ProteinID:CDY36556.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042586
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00062241001	InterPro:IPR036821	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576
PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079
UniParc:UPI0004EE0FF2	SEG:seg	:	:	:	:

Description

BnaA06g10090DPeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A078HFN3]

Coordinates

chrLK032378:+:148421..149510

Molecular Weight (calculated)

28837.9 Da

IEP (calculated)

7.555

GRAVY (calculated)

-0.217

Length

260 amino acids

Sequence
(BLAST)

001: METLFRVSLR LLPVSAAVTR RGAIRFPVST PGSSSHFLNH SLYKFSSSSS SVKTNAGWLL GLGDKKKPTN LPDIVAAGDP VLHEKSREVD PEEIGSERIQ
101: KIIDDMVKVM RLAPGVGLAA PQIGIPLRII VLEDTKEYIS YAPKEEVLAQ ERRPFDLLVM VNPELKGVSN KKALFFEGCL SVDGFRGAVE RYLEVEVTGY
201: DRQGKRIEVN ASGWQARILQ HECDHLDGNL YVDKMIPRTF RTVDNLDLPL AEGCPKLGPQ

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.