Factsheet for HORVU3Hr1G039820.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G047870.3	Barley	plastid	92.31	50.97
TraesCS3B01G234300.1	Wheat	plastid	87.41	48.45
TraesCS3D01G205000.1	Wheat	plastid	83.92	47.06
TraesCS3A01G204000.1	Wheat	plastid	83.92	46.51
KXG36812	Sorghum	plastid	63.64	35.69
Zm00001d022337_P002	Maize	plastid	62.24	34.77
KRH33613	Soybean	cytosol	32.87	34.31
KRH09750	Soybean	cytosol, mitochondrion	33.57	21.52
KRH44431	Soybean	mitochondrion	37.76	21.43
CDX81711	Canola	mitochondrion	37.76	21.09
CDY39642	Canola	mitochondrion	34.97	20.75
CDY55984	Canola	mitochondrion	37.06	20.62
Bra026766.1-P	Field mustard	mitochondrion	37.06	20.46
Bra026135.1-P	Field mustard	mitochondrion	37.06	20.31
CDY36556	Canola	mitochondrion	36.36	20.0
PGSC0003DMT400077039	Potato	mitochondrion	37.76	19.57
AT1G15390.1	Thale cress	plastid	36.36	19.33
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	37.06	19.13
Solyc07g015860.2.1	Tomato	plastid	36.36	18.77
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	17.48	16.13
Os01t0555800-01	Rice	plastid	2.1	2.48

Protein Annotations

Gene3D:3.90.45.10	MapMan:50.3.5	UniProt:A0A287KUH1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0042586	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G039820	EnsemblPlants:HORVU3Hr1G039820.2	InterPro:IPR036821
PFAM:PF01327	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420
UniParc:UPI000B46150E	SEG:seg	:	:	:	:

Description

Peptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A287KUH1]

Coordinates

chrchr3H:+:237289954..237290637

Molecular Weight (calculated)

14609.3 Da

IEP (calculated)

11.168

GRAVY (calculated)

0.236

Length

143 amino acids

Sequence
(BLAST)

001: KMEALRPLSI TAAAALLRAP PLPIPTFVGT GREVGGRRGK SVRAGAGGGG WLSGLLGRKG GGGAPMAMTV TLGTVKAGDP VLHEPAQEVS PGDVPSEKIQ
101: DIIDQMIAVM RKAPGVGLAA PQIGVPLKII LSFDLRKFTS LIL

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.