CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0555800-01	Rice	plastid	42.75	90.08
Zm00001d022337_P002	Maize	plastid	90.2	89.84
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	48.24	79.35
TraesCS3D01G205000.1	Wheat	plastid	76.08	76.08
HORVU3Hr1G047870.3	Barley	plastid	76.47	75.29
TraesCS3B01G234300.1	Wheat	plastid	76.08	75.19
TraesCS3A01G204000.1	Wheat	plastid	74.9	74.03
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	35.69	63.64
KRH09750	Soybean	cytosol, mitochondrion	54.12	61.88
KRH44431	Soybean	mitochondrion	60.0	60.71
KRH33613	Soybean	cytosol	32.55	60.58
CDY39642	Canola	mitochondrion	55.29	58.51
CDX81711	Canola	mitochondrion	56.86	56.64
CDY55984	Canola	mitochondrion	56.47	56.03
Bra026135.1-P	Field mustard	mitochondrion	57.25	55.94
Bra026766.1-P	Field mustard	mitochondrion	56.47	55.6
CDY36556	Canola	mitochondrion	56.47	55.38
PGSC0003DMT400077039	Potato	mitochondrion	59.61	55.07
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	58.82	54.15
Solyc07g015860.2.1	Tomato	plastid	58.04	53.43
AT1G15390.1	Thale cress	plastid	56.08	53.16
EES03332	Sorghum	mitochondrion	25.49	24.62

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	UniProt:A0A1B6QFV6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009505
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312
GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821	EnsemblPlants:KXG36812	ProteinID:KXG36812
ProteinID:KXG36812.1	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11
InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	EnsemblPlantsGene:SORBI_3002G396200	SUPFAM:SSF56420	SignalP:SignalP-noTM	TIGRFAMs:TIGR00079
UniParc:UPI00081ACF10	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:74822096..74823481

Molecular Weight (calculated)

27226.2 Da

IEP (calculated)

9.526

GRAVY (calculated)

0.007

Length

255 amino acids

Sequence
(BLAST)

001: MVALLRPLSA AAFLRVPAAP LTGSAVAASA VGGRRWRSVR ANAGGGWLSG LLGGKGGGAS TAMAVTPGTV KAGDPVLHEP AQEVAPGDVR SEKVQGIIDR
101: MVDVMRKAPG VGLAAPQIGV PLRIIVLEDT QEYISYAPKK EIEAQDRRPF DLLIIINPKI KNTSKRTALF FEGCLSVDGY RAVVERHLDV EVSGLDRNGS
201: AIKVQASGWQ ARILQHECDH LEGTLYVDRM VPRTFRIVDN LDLPLPIGCP QLGAR

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.