CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	50.67	72.9
Os01t0555800-01	Rice	plastid	37.67	69.42
KRH44431	Soybean	mitochondrion	66.37	58.73
KRH33613	Soybean	cytosol	35.87	58.39
CDY39642	Canola	mitochondrion	59.19	54.77
KXG36812	Sorghum	plastid	61.88	54.12
Bra026135.1-P	Field mustard	mitochondrion	61.88	52.87
Zm00001d022337_P002	Maize	plastid	60.54	52.73
CDX81711	Canola	mitochondrion	60.09	52.34
CDY36556	Canola	mitochondrion	60.99	52.31
CDY55984	Canola	mitochondrion	60.09	52.14
TraesCS3D01G205000.1	Wheat	plastid	59.19	51.76
HORVU3Hr1G047870.3	Barley	plastid	60.09	51.74
Bra026766.1-P	Field mustard	mitochondrion	60.09	51.74
TraesCS3A01G204000.1	Wheat	plastid	58.74	50.78
TraesCS3B01G234300.1	Wheat	plastid	58.74	50.78
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	62.33	50.18
AT1G15390.1	Thale cress	plastid	59.64	49.44
PGSC0003DMT400077039	Potato	mitochondrion	60.99	49.28
Solyc07g015860.2.1	Tomato	plastid	60.09	48.38
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	21.52	33.57
KRG94880	Soybean	plastid	19.28	21.61
KRG94095	Soybean	mitochondrion, plastid	24.66	20.6

Protein Annotations

EntrezGene:100306710	MapMan:17.7.6.1	Gene3D:3.90.45.10	EMBL:ACUP02009109	EMBL:BT090946	UniProt:C6T0J2
EnsemblPlantsGene:GLYMA_15G009700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042586
GO:GO:0046872	InterPro:IPR036821	EnsemblPlants:KRH09750	ProteinID:KRH09750	ProteinID:KRH09750.1	HAMAP:MF_00163
PFAM:PF01327	PIRSF:PIRSF004749	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase
InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI0001B1544F	:	:

Description

hypothetical protein

Coordinates

chr15:+:751766..753795

Molecular Weight (calculated)

24990.7 Da

IEP (calculated)

9.500

GRAVY (calculated)

-0.172

Length

223 amino acids

Sequence
(BLAST)

001: MEVVRRVVPK VLEKGVVMSR REMSSGSGWL AGKLAKIVKA GEAVLHSRAE EVEAIEIKSE RVQKIIDDMV RVMRKAPGVG LAAPQIGIPL RIIVLEDKIQ
101: YMAYYSNQEL KAQDRTPFDL LVILNPKLKN TTTRTALFFE GCLSVPGYSA VVERYLDVEV AGFDRYGEPI KINATGWQAR ILQHECDHLD GTLYVDKMVP
201: RTFRAPENSY KPLAHGCPKL GPR

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.