CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94095	Soybean	mitochondrion, plastid	85.43	63.67
VIT_14s0066g01070.t01	Wine grape	plastid	53.77	38.91
GSMUA_Achr1P04750_001	Banana	plastid	52.76	37.63
TraesCS3A01G225700.1	Wheat	cytosol	29.65	36.65
AT5G14660.1	Thale cress	plastid	49.75	36.26
PGSC0003DMT400001396	Potato	plastid	49.25	35.38
CDY09874	Canola	plastid	48.74	35.27
Solyc02g086680.2.1	Tomato	plastid	48.74	34.77
Bra008747.1-P	Field mustard	plastid	48.24	34.66
CDX69568	Canola	plastid	48.24	34.53
TraesCS3D01G223800.1	Wheat	mitochondrion	46.73	34.44
TraesCS3B01G258700.1	Wheat	plastid	46.73	34.44
Os01t0637600-01	Rice	mitochondrion	46.23	34.2
EES03332	Sorghum	mitochondrion	45.23	34.09
Zm00001d011445_P006	Maize	mitochondrion	42.71	32.2
Os01t0636600-01	Rice	plastid	41.21	30.48
KRH33613	Soybean	cytosol	16.58	24.09
KRH09750	Soybean	cytosol, mitochondrion	21.61	19.28
KRH44431	Soybean	mitochondrion	22.61	17.86

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	UniProt:A0A0R0ELH1	EMBL:ACUP02012051	EnsemblPlantsGene:GLYMA_19G115400	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042586	GO:GO:0046872	InterPro:IPR036821
EnsemblPlants:KRG94880	ProteinID:KRG94880	ProteinID:KRG94880.1	PFAM:PF01327	PIRSF:PIRSF004749	PRINTS:PR01576
PANTHER:PTHR10458	PANTHER:PTHR10458:SF2	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	UniParc:UPI0006ED8C2C

Description

hypothetical protein

Coordinates

chr19:-:37069261..37072521

Molecular Weight (calculated)

22163.2 Da

IEP (calculated)

10.003

GRAVY (calculated)

-0.121

Length

199 amino acids

Sequence
(BLAST)

001: MASLRCLHST HPHLHRGSAL LAISNRCFNH SSLLNRTLSV NPPRTAPPRA MAKPSFSTAQ DLVASPGDFE FAQPLKIVEY PDPRLRARNK RIVAFDDSLK
101: KLVHEMFDVM YKTDGIGLSA PQLGINVQLM VFNPVGERGE GEEIVLVNPR VSQYSKKLTL FNEGCLSFPG INADVKCLMK VKRNIDVDPI LQKIVFKAI

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.