Factsheet for Os01t0637600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
endoplasmic reticulum 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 18718933
plastid: 18718933
mitochondrion: 23257241
plastid: 23257241

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

gfp PMID: 18718933 doi

S Moon, C Giglione, DY Lee, S An, DH Jeong, T Meinnel, G An

National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G225700.1	Wheat	cytosol	48.7	81.37
TraesCS3D01G223800.1	Wheat	mitochondrion	75.84	75.56
TraesCS3B01G258700.1	Wheat	plastid	75.84	75.56
EES03332	Sorghum	mitochondrion	73.23	74.62
Os01t0636600-01	Rice	plastid	74.35	74.35
Zm00001d011445_P006	Maize	mitochondrion	69.89	71.21
GSMUA_Achr1P04750_001	Banana	plastid	60.22	58.06
AT5G14660.1	Thale cress	plastid	54.28	53.48
CDY09874	Canola	plastid	54.65	53.45
VIT_14s0066g01070.t01	Wine grape	plastid	54.65	53.45
Bra008747.1-P	Field mustard	plastid	54.28	52.71
CDX69568	Canola	plastid	54.28	52.52
KRG94095	Soybean	mitochondrion, plastid	51.67	52.06
PGSC0003DMT400001396	Potato	plastid	53.53	51.99
Solyc02g086680.2.1	Tomato	plastid	52.42	50.54
KRG94880	Soybean	plastid	34.2	46.23
Os01t0555800-01	Rice	plastid	14.5	32.23

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	EntrezGene:4326576	EMBL:AK106980	ProteinID:BAD68576.1	ProteinID:BAD68940.1
ProteinID:BAF05583.1	ProteinID:BAS73349.1	ncoils:Coil	ProteinID:EEE55058.1	EMBL:EU213046	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787	GO:GO:0018206
GO:GO:0019538	GO:GO:0031365	GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821
HAMAP:MF_00163	EnsemblPlantsGene:Os01g0637600	EnsemblPlants:Os01t0637600-01	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458
PANTHER:PTHR10458:SF2	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	UniProt:Q5VNN5	SUPFAM:SSF56420	TIGRFAMs:TIGR00079
UniParc:UPI0000457EEF	RefSeq:XP_015612309.1	SEG:seg	:	:	:

Description

peptide deformylase 1BSimilar to Peptide deformylase, chloroplast precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase). (Os01t0637600-01)

Coordinates

chr1:-:25585914..25589162

Molecular Weight (calculated)

29677.9 Da

IEP (calculated)

8.906

GRAVY (calculated)

-0.142

Length

269 amino acids

Sequence
(BLAST)

001: MAARLHLRLG PRLRGFASSF APLLAAHPRA LPLSRMGSVA PLAAARARRG FGSAVATAPP AEDEDFATAA DLQFEPPLKV VKYPDPILRA RNKRINTFDD
101: NLRSLTDEMF DVMYKTDGIG LSAPQVGVNV QLMVFNPAGV KGEGEEIVLV NPVVYKMSKR LLVYEEGCLS FPGIYANVVR PDNVKIDAQD VTGAKIKVKL
201: SGLSARVFQH EFDHLQGILF FDRMSLDVLE SVREGLKDLE KKYEESTGLV SPESIENYKG RKDLISFSR

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.