Factsheet for Solyc02g086680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001396	Potato	plastid	92.83	93.5
VIT_14s0066g01070.t01	Wine grape	plastid	63.44	64.36
TraesCS3A01G225700.1	Wheat	cytosol	35.48	61.49
CDY09874	Canola	plastid	57.71	58.55
Bra008747.1-P	Field mustard	plastid	57.71	58.12
CDX69568	Canola	plastid	57.35	57.55
AT5G14660.1	Thale cress	plastid	56.27	57.51
KRG94095	Soybean	mitochondrion, plastid	54.84	57.3
GSMUA_Achr1P04750_001	Banana	plastid	53.05	53.05
EES03332	Sorghum	mitochondrion	49.82	52.65
Os01t0637600-01	Rice	mitochondrion	50.54	52.42
Zm00001d011445_P006	Maize	mitochondrion	47.67	50.38
TraesCS3D01G223800.1	Wheat	mitochondrion	48.39	50.0
TraesCS3B01G258700.1	Wheat	plastid	48.03	49.63
KRG94880	Soybean	plastid	34.77	48.74
Os01t0636600-01	Rice	plastid	42.29	43.87
Solyc07g015860.2.1	Tomato	plastid	19.71	19.86

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	EMBL:AF250958	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0018206	GO:GO:0019538	GO:GO:0031365
GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821	HAMAP:MF_00163	PFAM:PF01327
PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF2	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	UniProt:Q9FV54
SUPFAM:SSF56420	EnsemblPlantsGene:Solyc02g086680.2	EnsemblPlants:Solyc02g086680.2.1	TIGRFAMs:TIGR00079	UniParc:UPI0000129133	SEG:seg

Description

PDF1BPeptide deformylase 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FV54]

Coordinates

chr2:-:49328459..49331889

Molecular Weight (calculated)

31198.6 Da

IEP (calculated)

9.744

GRAVY (calculated)

-0.276

Length

279 amino acids

Sequence
(BLAST)

001: MAMAAASWAS SSSFTRFLRP LLSRNSSPSP ISYSLHRYKS ANCLFFSASS NKPPKLAVYA QARRVLSSKT KGDEIATPAD LSFVVPLKIV EYPDPILRAK
101: NKRIDNFDAN LKKLVDEMFD IMYKTDGIGL SAPQVGMNVQ LMVFNAAGER GEGEEIVLVN PRVSRYSRRI IPYEEGCLSF PMIHGDVKRP ESVKVDAQDI
201: NGTRFEISLS ALPARVFQHE FDHLQGVLFF DKMTDEVLDT IREKLVALEK KYEDRTGLPT PESINTRKIK KAAVGFGKS

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.