Factsheet for GSMUA_Achr1P04750_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G225700.1	Wheat	cytosol	37.99	65.84
Os01t0637600-01	Rice	mitochondrion	58.06	60.22
KRG94095	Soybean	mitochondrion, plastid	56.99	59.55
EES03332	Sorghum	mitochondrion	55.91	59.09
VIT_14s0066g01070.t01	Wine grape	plastid	58.06	58.91
Zm00001d011445_P006	Maize	mitochondrion	55.2	58.33
CDY09874	Canola	plastid	57.35	58.18
Bra008747.1-P	Field mustard	plastid	56.99	57.4
CDX69568	Canola	plastid	56.99	57.19
AT5G14660.1	Thale cress	plastid	55.91	57.14
TraesCS3B01G258700.1	Wheat	plastid	53.41	55.19
TraesCS3D01G223800.1	Wheat	mitochondrion	53.41	55.19
PGSC0003DMT400001396	Potato	plastid	53.41	53.79
Solyc02g086680.2.1	Tomato	plastid	53.05	53.05
KRG94880	Soybean	plastid	37.63	52.76
Os01t0636600-01	Rice	plastid	49.82	51.67
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	19.0	34.19

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0042586	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr1G04750_001	EnsemblPlants:GSMUA_Achr1P04750_001	EnsemblPlants:GSMUA_Achr1T04750_001	InterPro:IPR036821
UniProt:M0RX33	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF2
InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI000294DF89	SEG:seg

Description

Peptide deformylase 1B, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G04750_001]

Coordinates

chr1:+:3950697..3955471

Molecular Weight (calculated)

31188.4 Da

IEP (calculated)

9.283

GRAVY (calculated)

-0.246

Length

279 amino acids

Sequence
(BLAST)

001: MAARLSASPL ISYAALIPLL SRRAATVRYP FPSSGRSLLS FSSKTLTVAR DATAMDFSAR ARRGFASQVD DFASPDDLCF EAPLKIVEYP DPILRARNKR
101: ISTFDENLKK LAKEMFDVMY KTDGIGLSAP QVGVNVQLMV FNPAGERGEG EEIVLVNPKI YKASTRTLFF NEGCLSFPGI YADVERPASI KIDARNITGA
201: RFRVTLSGLP ARIFQHEFDH LQGILFFDRM TEDVLESIRS ELKALEQKYE SRTGLPSPES IDKYERTQRR NEIAGFAGR

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.