Factsheet for Zm00001d011445_P006

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03332	Sorghum	mitochondrion	84.47	84.47
TraesCS3A01G225700.1	Wheat	cytosol	43.94	72.05
Os01t0637600-01	Rice	mitochondrion	71.21	69.89
TraesCS3D01G223800.1	Wheat	mitochondrion	68.94	67.41
TraesCS3B01G258700.1	Wheat	plastid	68.56	67.04
Os01t0636600-01	Rice	plastid	60.98	59.85
GSMUA_Achr1P04750_001	Banana	plastid	58.33	55.2
CDY09874	Canola	plastid	55.3	53.09
Bra008747.1-P	Field mustard	plastid	54.92	52.35
CDX69568	Canola	plastid	54.92	52.16
AT5G14660.1	Thale cress	plastid	53.79	52.01
VIT_14s0066g01070.t01	Wine grape	plastid	51.89	49.82
PGSC0003DMT400001396	Potato	plastid	51.14	48.74
KRG94095	Soybean	mitochondrion, plastid	48.48	47.94
Solyc02g086680.2.1	Tomato	plastid	50.38	47.67
KRG94880	Soybean	plastid	32.2	42.71
Zm00001d022337_P002	Maize	plastid	23.86	24.61

Protein Annotations

EntrezGene:103636114	MapMan:17.7.6.1	Gene3D:3.90.45.10	ProteinID:AQK96924.1	ProteinID:AQK96925.1	ProteinID:AQK96926.1
ProteinID:AQK96927.1	ProteinID:AQK96928.1	ProteinID:AQK96929.1	ProteinID:AQK96930.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042586	GO:GO:0046872	InterPro:IPR036821
UniProt:K7VJY5	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF2
InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI000220C77F	EnsemblPlantsGene:Zm00001d011445
EnsemblPlants:Zm00001d011445_P006	EnsemblPlants:Zm00001d011445_T006	SEG:seg	:	:	:

Description

Peptide deformylase 1B chloroplastic/mitochondrial

Coordinates

chr8:-:150553573..150561519

Molecular Weight (calculated)

29228.7 Da

IEP (calculated)

8.460

GRAVY (calculated)

-0.058

Length

264 amino acids

Sequence
(BLAST)

001: MAAALCPRLR GFMASSRPLL ALRPVALRLP MRRAVPAMPL AARARRGLGS STANAQLDED FATASDLRFE SPLEVVKYPD PVLRARNKRI NTFDDNLRAL
101: ADEMFDVMYK TDGIGLSAPQ VGVNVQLMVF NPAGVKGEGE EIVLVNPVIY KSAKRLLVFE EGCLSFPGIY GNVVRPESVK IEAQDVTGAK IKVKLSGIHA
201: RVFQHEFDHL LGILFFDRMT IDVLETVREE LKNLEKKYEE ITGLASPETV ENCKGAKDVF SLPR

Best Arabidopsis Sequence Match ( AT5G14660.1 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.