CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008747.1-P	Field mustard	plastid	98.92	99.28
CDY09874	Canola	plastid	97.12	98.18
AT5G14660.1	Thale cress	plastid	85.25	86.81
TraesCS3A01G225700.1	Wheat	cytosol	36.69	63.35
VIT_14s0066g01070.t01	Wine grape	plastid	58.63	59.27
PGSC0003DMT400001396	Potato	plastid	58.63	58.84
Solyc02g086680.2.1	Tomato	plastid	57.55	57.35
KRG94095	Soybean	mitochondrion, plastid	55.04	57.3
GSMUA_Achr1P04750_001	Banana	plastid	57.19	56.99
EES03332	Sorghum	mitochondrion	52.52	55.3
Zm00001d011445_P006	Maize	mitochondrion	52.16	54.92
Os01t0637600-01	Rice	mitochondrion	52.52	54.28
TraesCS3D01G223800.1	Wheat	mitochondrion	50.36	51.85
TraesCS3B01G258700.1	Wheat	plastid	49.64	51.11
KRG94880	Soybean	plastid	34.53	48.24
Os01t0636600-01	Rice	plastid	45.68	47.21
CDY39642	Canola	mitochondrion	23.38	26.97
CDX81711	Canola	mitochondrion	24.1	26.17
CDY55984	Canola	mitochondrion	23.74	25.68
CDY36556	Canola	mitochondrion	22.66	24.23

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:A0A078C3I0	EnsemblPlants:CDX69568	ProteinID:CDX69568	ProteinID:CDX69568.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787	GO:GO:0042586	EnsemblPlantsGene:GSBRNA2T00135577001
InterPro:IPR036821	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF2
InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI0004EE4E3F	SEG:seg

Description

BnaA10g19170D

Coordinates

chrLK031790:+:853270..855394

Molecular Weight (calculated)

30957.2 Da

IEP (calculated)

9.054

GRAVY (calculated)

-0.297

Length

278 amino acids

Sequence
(BLAST)

001: MAVCNCFLQA PPFSRFLSPV FSRRAPNLFP GYGQLKSTVM FSSSSSSAAN RIGPLTSPVR AEVKRVSRKE SEIASASDLQ FETPLKIVEY PDPILRAKSK
101: RIGVFDENLK NLADAMFDVM YKTDGIGLSA PQVGLNVQLM VFNPAGESGE GEEIVLVNPK INKYSDKLVP FNEGCLSFPG IYADVVRPQS VKIDARDITG
201: ARFSISLSRL PARIFQHEYD HLEGVLFFDR MTDDVLDTIR EELEALEKKY EEKTGLPSPE KVQARQKRKA GVGFGKRR

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.