CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
endoplasmic reticulum 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011445_P006	Maize	mitochondrion	84.47	84.47
TraesCS3A01G225700.1	Wheat	cytosol	48.86	80.12
Os01t0637600-01	Rice	mitochondrion	74.62	73.23
TraesCS3D01G223800.1	Wheat	mitochondrion	73.86	72.22
TraesCS3B01G258700.1	Wheat	plastid	73.48	71.85
Os01t0636600-01	Rice	plastid	60.98	59.85
GSMUA_Achr1P04750_001	Banana	plastid	59.09	55.91
CDY09874	Canola	plastid	55.68	53.45
Bra008747.1-P	Field mustard	plastid	55.3	52.71
CDX69568	Canola	plastid	55.3	52.52
AT5G14660.1	Thale cress	plastid	54.17	52.38
VIT_14s0066g01070.t01	Wine grape	plastid	53.79	51.64
KRG94095	Soybean	mitochondrion, plastid	51.52	50.94
PGSC0003DMT400001396	Potato	plastid	53.41	50.9
Solyc02g086680.2.1	Tomato	plastid	52.65	49.82
KRG94880	Soybean	plastid	34.09	45.23
KXG36812	Sorghum	plastid	24.62	25.49

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	EntrezGene:8058210	UniProt:C5XEI7	ncoils:Coil	EnsemblPlants:EES03332
ProteinID:EES03332	ProteinID:EES03332.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0018206	GO:GO:0019538	GO:GO:0031365	GO:GO:0042586	GO:GO:0043686
GO:GO:0046872	InterPro:IPR036821	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458
PANTHER:PTHR10458:SF2	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	EnsemblPlantsGene:SORBI_3003G232700	SUPFAM:SSF56420	unigene:Sbi.7871
TIGRFAMs:TIGR00079	UniParc:UPI0001A850E2	RefSeq:XP_002458212.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:57177745..57181696

Molecular Weight (calculated)

29007.3 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.067

Length

264 amino acids

Sequence
(BLAST)

001: MAAGLCPRLR TLLASSRPLL AARSGALPLP LRRAGPAMPL VARARRGLGS STAADPLAED FATATDLRFE SPLEVVKYPD PILRARNKRI NAFDANLRAL
101: ADEMFDVMYK TDGIGLSAPQ VGVNVQLMVF NPAGVKGEGE EIVLVNPVVY KSAKRLLVFE EGCLSFPGIY GNVLRPESVK IEAQDVTGAK IKVKLSGLPA
201: RVFQHEFDHL LGILFFDRMT MDVLETVREE LKNLEKKYEE RTGLASPETV ENYEGAKDVF SFSR

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.