Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G223800.1 | Wheat | mitochondrion | 96.89 | 57.78 |
| TraesCS3B01G258700.1 | Wheat | plastid | 95.65 | 57.04 |
| EES03332 | Sorghum | mitochondrion | 80.12 | 48.86 |
| Os01t0637600-01 | Rice | mitochondrion | 81.37 | 48.7 |
| Zm00001d011445_P006 | Maize | mitochondrion | 72.05 | 43.94 |
| Os01t0636600-01 | Rice | plastid | 71.43 | 42.75 |
| KRG94095 | Soybean | mitochondrion, plastid | 63.98 | 38.58 |
| GSMUA_Achr1P04750_001 | Banana | plastid | 65.84 | 37.99 |
| VIT_14s0066g01070.t01 | Wine grape | plastid | 64.6 | 37.82 |
| CDY09874 | Canola | plastid | 63.35 | 37.09 |
| Bra008747.1-P | Field mustard | plastid | 63.35 | 36.82 |
| CDX69568 | Canola | plastid | 63.35 | 36.69 |
| AT5G14660.1 | Thale cress | plastid | 62.11 | 36.63 |
| PGSC0003DMT400001396 | Potato | plastid | 62.11 | 36.1 |
| Solyc02g086680.2.1 | Tomato | plastid | 61.49 | 35.48 |
| KRG94880 | Soybean | plastid | 36.65 | 29.65 |
| TraesCS3A01G204000.1 | Wheat | plastid | 30.43 | 18.99 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G225700.1 | EnsemblPlantsGene:TraesCS3A01G225700 | Gene3D:3.90.45.10 | HAMAP:MF_00163 | InterPro:IPR036821 | InterPro:Peptide_deformylase |
| InterPro:Peptide_deformylase_sf | ncoils:Coil | PANTHER:PTHR10458 | PANTHER:PTHR10458:SF2 | PFAM:PF01327 | PIRSF:PIRSF004749 |
| PRINTS:PR01576 | SUPFAM:SSF56420 | TIGR:cd00487 | TIGRFAMs:TIGR00079 | MapMan:17.7.6.1 | : |
Description
No Description!
Coordinates
chr3A:+:423481236..423485013
Molecular Weight (calculated)
17941.6 Da
IEP (calculated)
5.005
GRAVY (calculated)
-0.084
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDVMYKTDG IGLSAPQVGV NVQLMVFNPA GVKGEGEEIV LVNPVVYKFS KRLSVYEEGC LSFPGIYANV LRPDTVKIDA QDASGAKIKV KLSELSARVF
101: QHEFDHLQGI LFFDRMTMDV VESIHEQLKS LEDKYVEITG QASPETISNY RGTKDVVSFS R
101: QHEFDHLQGI LFFDRMTMDV VESIHEQLKS LEDKYVEITG QASPETISNY RGTKDVVSFS R
001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR
Arabidopsis Description
PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.