Factsheet for PGSC0003DMT400001396

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086680.2.1	Tomato	plastid	93.5	92.83
VIT_14s0066g01070.t01	Wine grape	plastid	63.9	64.36
TraesCS3A01G225700.1	Wheat	cytosol	36.1	62.11
CDY09874	Canola	plastid	59.21	59.64
Bra008747.1-P	Field mustard	plastid	59.21	59.21
CDX69568	Canola	plastid	58.84	58.63
AT5G14660.1	Thale cress	plastid	57.4	58.24
KRG94095	Soybean	mitochondrion, plastid	53.79	55.81
Os01t0637600-01	Rice	mitochondrion	51.99	53.53
EES03332	Sorghum	mitochondrion	50.9	53.41
GSMUA_Achr1P04750_001	Banana	plastid	53.79	53.41
Zm00001d011445_P006	Maize	mitochondrion	48.74	51.14
TraesCS3D01G223800.1	Wheat	mitochondrion	49.1	50.37
TraesCS3B01G258700.1	Wheat	plastid	48.38	49.63
KRG94880	Soybean	plastid	35.38	49.25
Os01t0636600-01	Rice	plastid	42.96	44.24
PGSC0003DMT400077039	Potato	mitochondrion	20.22	20.29

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0042586	GO:GO:0046872	InterPro:IPR036821	UniProt:M0ZID9	HAMAP:MF_00163	PFAM:PF01327
EnsemblPlantsGene:PGSC0003DMG400000518	PGSC:PGSC0003DMG400000518	EnsemblPlants:PGSC0003DMT400001396	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF2
InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI000295D71D	SEG:seg

Description

Peptide deformylase 1B, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400000518]

Coordinates

chr2:+:47177168..47180881

Molecular Weight (calculated)

30863.2 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.242

Length

277 amino acids

Sequence
(BLAST)

001: MAAAIWASSS SFARSLRPLL SWNSSLSPIN FTLHRYKSAN CLFFSASSNK PPKLAVYAQA RRVLSSKTKG DEIATPADLS FEVPLKIVEY PDPILRAKNK
101: RIGKFDANLK KLVDEMFDIM YKTDGIGLSA PQVGMNVQLM VFNAAGERGE GEEIVLVNPR VSRYSRRIIP YEEGCLSFPM IHGDVERPDS VKVGAQDING
201: ARFEISLSAL PARVFQHEFD HLQGVLFFDK MTDEVLDTIR ETLVALEKKY EERTGLPTPE SINTRKTKKA AVGFGKS

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.