CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 7
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94880	Soybean	plastid	63.67	85.43
TraesCS3A01G225700.1	Wheat	cytosol	38.58	63.98
VIT_14s0066g01070.t01	Wine grape	plastid	62.92	61.09
AT5G14660.1	Thale cress	plastid	58.43	57.14
GSMUA_Achr1P04750_001	Banana	plastid	59.55	56.99
CDY09874	Canola	plastid	57.68	56.0
Bra008747.1-P	Field mustard	plastid	57.3	55.23
CDX69568	Canola	plastid	57.3	55.04
Solyc02g086680.2.1	Tomato	plastid	57.3	54.84
PGSC0003DMT400001396	Potato	plastid	55.81	53.79
Os01t0637600-01	Rice	mitochondrion	52.06	51.67
EES03332	Sorghum	mitochondrion	50.94	51.52
TraesCS3D01G223800.1	Wheat	mitochondrion	50.94	50.37
TraesCS3B01G258700.1	Wheat	plastid	50.56	50.0
Zm00001d011445_P006	Maize	mitochondrion	47.94	48.48
Os01t0636600-01	Rice	plastid	42.7	42.38
KRH09750	Soybean	cytosol, mitochondrion	20.6	24.66
KRH33613	Soybean	cytosol	12.36	24.09
KRH44431	Soybean	mitochondrion	21.72	23.02

Protein Annotations

EntrezGene:100500424	MapMan:17.7.6.1	Gene3D:3.90.45.10	EMBL:ACUP02011723	EnsemblPlantsGene:GLYMA_19G061900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0018206	GO:GO:0019538
GO:GO:0031365	GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821	UniProt:K7MWY0
EnsemblPlants:KRG94095	ProteinID:KRG94095	ProteinID:KRG94095.1	ProteinID:KRG94096.1	HAMAP:MF_00163	PFAM:PF01327
PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF2	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420
TIGRFAMs:TIGR00079	UniParc:UPI00023D9A48	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:12966313..12982373

Molecular Weight (calculated)

29959.4 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.247

Length

267 amino acids

Sequence
(BLAST)

001: MASLTCLRPT HPHLHRGSVL LAISNRCFNH SSLLNWILSV NPPRTAPPRA MAKPCSSPAQ DLVASPGDFE FVLPLKIVEY PDPRLRARNK RIVAFDDSLK
101: KLVHEMFDVM YKTDGIGLSA PQLGINVQLM VFNPVGEHGE GEEIVLVNPR VSQYSKKLTL FNEGCLSFPG INADVKRPES VKIDARDING TRFSVNLSDL
201: PARIFQHEFD HLQGILFFER MTEEVLDSIC GQLQALETKY EGMTGLPSPE KIENRRRRKV AVGFGKR

Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)

001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR

Arabidopsis Description

PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.