CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44431	Soybean	mitochondrion	87.59	47.62
CDY39642	Canola	mitochondrion	64.96	36.93
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	41.61	36.77
KRH09750	Soybean	cytosol, mitochondrion	58.39	35.87
Bra026135.1-P	Field mustard	mitochondrion	67.15	35.25
PGSC0003DMT400077039	Potato	mitochondrion	70.07	34.78
CDY36556	Canola	mitochondrion	65.69	34.62
CDX81711	Canola	mitochondrion	64.23	34.38
CDY55984	Canola	mitochondrion	64.23	34.24
Solyc07g015860.2.1	Tomato	plastid	68.61	33.94
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	68.61	33.94
Bra026766.1-P	Field mustard	mitochondrion	63.5	33.59
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	34.31	32.87
KXG36812	Sorghum	plastid	60.58	32.55
TraesCS3D01G205000.1	Wheat	plastid	60.58	32.55
AT1G15390.1	Thale cress	plastid	63.5	32.34
TraesCS3B01G234300.1	Wheat	plastid	60.58	32.17
HORVU3Hr1G047870.3	Barley	plastid	60.58	32.05
TraesCS3A01G204000.1	Wheat	plastid	59.85	31.78
Zm00001d022337_P002	Maize	plastid	59.12	31.64
Os01t0555800-01	Rice	plastid	20.44	23.14
KRG94880	Soybean	plastid	24.09	16.58
KRG94095	Soybean	mitochondrion, plastid	24.09	12.36

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	UniProt:A0A0R0HSP6	EMBL:ACUP02006543	EnsemblPlantsGene:GLYMA_10G136000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0018206	GO:GO:0019538	GO:GO:0031365
GO:GO:0042586	GO:GO:0043686	GO:GO:0046872	InterPro:IPR036821	EnsemblPlants:KRH33613	ProteinID:KRH33613
ProteinID:KRH33613.1	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase
InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	UniParc:UPI0006ED7FBB	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:36752620..36753917

Molecular Weight (calculated)

15288.8 Da

IEP (calculated)

9.546

GRAVY (calculated)

-0.161

Length

137 amino acids

Sequence
(BLAST)

001: ARAGWFLGLG ANNKKTNLPD TVKVGDPVLH EPAQDVDPIE IKLERVQKII DDMIQVMRKA SGVGLAAPQI GIPLRIIVLE DTKEYISYVS KEEAKTQDRR
101: PADLLVILNP KLDKKGKRIA LFFEGCLRAV KQFDTIL

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.