Factsheet for HORVU3Hr1G047870.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G234300.1	Wheat	plastid	94.21	94.57
TraesCS3D01G205000.1	Wheat	plastid	92.28	93.73
TraesCS3A01G204000.1	Wheat	plastid	92.66	93.02
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	50.97	92.31
Os01t0555800-01	Rice	plastid	39.77	85.12
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	47.1	78.71
Zm00001d022337_P002	Maize	plastid	75.68	76.56
KXG36812	Sorghum	plastid	75.29	76.47
KRH44431	Soybean	mitochondrion	59.07	60.71
KRH33613	Soybean	cytosol	32.05	60.58
KRH09750	Soybean	cytosol, mitochondrion	51.74	60.09
CDY39642	Canola	mitochondrion	53.28	57.26
CDX81711	Canola	mitochondrion	54.83	55.47
CDY55984	Canola	mitochondrion	54.44	54.86
Bra026766.1-P	Field mustard	mitochondrion	54.44	54.44
PGSC0003DMT400077039	Potato	mitochondrion	57.92	54.35
Bra026135.1-P	Field mustard	mitochondrion	54.44	54.02
CDY36556	Canola	mitochondrion	54.05	53.85
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	57.53	53.79
Solyc07g015860.2.1	Tomato	plastid	57.14	53.43
AT1G15390.1	Thale cress	plastid	54.05	52.04

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	EMBL:AK370389	UniProt:F2E2L8	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0042586	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G047870	EnsemblPlants:HORVU3Hr1G047870.3
InterPro:IPR036821	HAMAP:MF_00163	PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11
InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI00020080C9	SEG:seg

Description

Peptide deformylase [Source:UniProtKB/TrEMBL;Acc:F2E2L8]

Coordinates

chrchr3H:-:328782887..328784302

Molecular Weight (calculated)

27572.6 Da

IEP (calculated)

7.808

GRAVY (calculated)

-0.057

Length

259 amino acids

Sequence
(BLAST)

001: MEALRPLSIT AAAALLRAPP LPIPTFVGTG REVGGRRGKS VRAGAGGGGW LSGLLGRKGG GGAPMAMTVT LGTVKAGDPV LHEPAQEVSP GDVPSEKIQD
101: IIDQMIAVMR KAPGVGLAAP QIGVPLKIIV LEDTQEYISY VSKEDIDAQD RCPFDLLVVI NPKLKKTSKR TACFYEGCLS VDGYRAVVER HLDVEVSGLD
201: RNGRPMKVEA SGWQARILQH ECDHLEGTLY VDKMVPRTFR TVDNLNLPLA TGCPPLGAC

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.