Factsheet for TraesCS3A01G204000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G234300.1	Wheat	plastid	96.12	96.12
TraesCS3D01G205000.1	Wheat	plastid	94.96	96.08
HORVU3Hr1G047870.3	Barley	plastid	93.02	92.66
Os01t0555800-01	Rice	plastid	39.53	84.3
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	46.51	83.92
GSMUA_Achr1P05350_001	Banana	cytosol, mitochondrion	47.29	78.71
Zm00001d022337_P002	Maize	plastid	75.58	76.17
KXG36812	Sorghum	plastid	74.03	74.9
KRH44431	Soybean	mitochondrion	58.91	60.32
KRH33613	Soybean	cytosol	31.78	59.85
KRH09750	Soybean	cytosol, mitochondrion	50.78	58.74
CDY39642	Canola	mitochondrion	53.49	57.26
CDX81711	Canola	mitochondrion	55.04	55.47
CDY55984	Canola	mitochondrion	54.65	54.86
Bra026766.1-P	Field mustard	mitochondrion	54.65	54.44
Bra026135.1-P	Field mustard	mitochondrion	55.04	54.41
CDY36556	Canola	mitochondrion	54.65	54.23
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	57.75	53.79
PGSC0003DMT400077039	Potato	mitochondrion	56.98	53.26
Solyc07g015860.2.1	Tomato	plastid	56.59	52.71
AT1G15390.1	Thale cress	plastid	54.26	52.04
TraesCS3A01G225700.1	Wheat	cytosol	18.99	30.43

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030312	GO:GO:0042586	GO:GO:0043686	InterPro:IPR036821	HAMAP:MF_00163
PFAM:PF01327	PRINTS:PR01576	PANTHER:PTHR10458	PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf
SUPFAM:SSF56420	SignalP:SignalP-noTM	TIGRFAMs:TIGR00079	EnsemblPlantsGene:TraesCS3A01G204000	EnsemblPlants:TraesCS3A01G204000.1	TIGR:cd00487
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:354852406..354853515

Molecular Weight (calculated)

27549.4 Da

IEP (calculated)

8.818

GRAVY (calculated)

-0.165

Length

258 amino acids

Sequence
(BLAST)

001: MEALRPLSIT AVAALLSAAP VRIPTFVGTG REVGGRRGKS VRAGAGGGGW LSGLLGRKGG GGAPTAMTLT PGTVKAGDPV LHEPAQEVSP RDVPSEKIQG
101: VIDQMIAVMR KAPGVGLAAP QIGEPLKIIV LEDTQEYISY ASKEDIDAQD RRSFDLLVVI NPKLRKTSKR TARFYEGCLS VDGYRAVVER HLDVEVSGLD
201: RNGHPMKVEA SGWQARILQH ECDHLEGTLY VDKMVPRTFR TVDNLNLPLA TGCPPLGA

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.