Factsheet for GSMUA_Achr1P05350_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0555800-01	Rice	plastid	60.65	77.69
KRH09750	Soybean	cytosol, mitochondrion	72.9	50.67
CDY39642	Canola	mitochondrion	78.06	50.21
KRH44431	Soybean	mitochondrion	80.0	49.21
KXG36812	Sorghum	plastid	79.35	48.24
TraesCS3B01G234300.1	Wheat	plastid	80.0	48.06
TraesCS3D01G205000.1	Wheat	plastid	78.71	47.84
Zm00001d022337_P002	Maize	plastid	78.71	47.66
Solyc07g015860.2.1	Tomato	plastid	84.52	47.29
TraesCS3A01G204000.1	Wheat	plastid	78.71	47.29
CDX81711	Canola	mitochondrion	78.06	47.27
HORVU3Hr1G047870.3	Barley	plastid	78.71	47.1
PGSC0003DMT400077039	Potato	mitochondrion	83.87	47.1
CDY55984	Canola	mitochondrion	78.06	47.08
Bra026135.1-P	Field mustard	mitochondrion	78.71	46.74
Bra026766.1-P	Field mustard	mitochondrion	78.06	46.72
CDY36556	Canola	mitochondrion	78.06	46.54
VIT_09s0002g06390.t01	Wine grape	cytosol, plastid	81.29	45.49
AT1G15390.1	Thale cress	plastid	78.06	44.98
KRH33613	Soybean	cytosol	36.77	41.61
GSMUA_Achr1P04750_001	Banana	plastid	34.19	19.0
HORVU3Hr1G039820.2	Barley	cytosol, mitochondrion, plastid	16.13	17.48

Protein Annotations

MapMan:17.7.6.1	Gene3D:3.90.45.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009505	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312	GO:GO:0042586
GO:GO:0043686	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr1G05350_001	EnsemblPlants:GSMUA_Achr1P05350_001	EnsemblPlants:GSMUA_Achr1T05350_001	InterPro:IPR036821
UniProt:M0RX93	HAMAP:MF_00163	PFAM:PF01327	PIRSF:PIRSF004749	PRINTS:PR01576	PANTHER:PTHR10458
PANTHER:PTHR10458:SF11	InterPro:Peptide_deformylase	InterPro:Peptide_deformylase_sf	SUPFAM:SSF56420	TIGRFAMs:TIGR00079	UniParc:UPI00029563E0

Description

Peptide deformylase 1A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G05350_001]

Coordinates

chr1:-:4383434..4385689

Molecular Weight (calculated)

17317.3 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.073

Length

155 amino acids

Sequence
(BLAST)

001: MVSAMRKAPG VGLAAPQIGV PLKIIVLEDT KEYISYAPKN EIEAQDRRPF DLLVIVNPKL KKKSNKTAFF FEGCLSVDGF RAVVERYLEV EVTGLDRNGH
101: PIKIDAIGWQ ARILQHECDH LDGTLYVDKM VPRTFRTVEN LGLPLAMGCP PLSVR

Best Arabidopsis Sequence Match ( AT1G15390.1 )
(BLAST)

001: MGLHRDEATA METLFRVSLR LLPVSAAVTC RSIRFPVSRP GSSHLLNRKL YNLPTSSSSS LSTKAGWLLG LGEKKKKVDL PEIVASGDPV LHEKAREVDP
101: GEIGSERIQK IIDDMIKVMR LAPGVGLAAP QIGVPLRIIV LEDTKEYISY APKEEILAQE RRHFDLMVMV NPVLKERSNK KALFFEGCLS VDGFRAAVER
201: YLEVVVTGYD RQGKRIEVNA SGWQARILQH ECDHLDGNLY VDKMVPRTFR TVDNLDLPLA EGCPKLGPQ

Arabidopsis Description

PDF1APeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A178WDP8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.