Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09874 | Canola | plastid | 87.91 | 87.27 |
| Bra008747.1-P | Field mustard | plastid | 86.81 | 85.56 |
| CDX69568 | Canola | plastid | 86.81 | 85.25 |
| TraesCS3A01G225700.1 | Wheat | cytosol | 36.63 | 62.11 |
| VIT_14s0066g01070.t01 | Wine grape | plastid | 59.34 | 58.91 |
| KRG94095 | Soybean | mitochondrion, plastid | 57.14 | 58.43 |
| PGSC0003DMT400001396 | Potato | plastid | 58.24 | 57.4 |
| Solyc02g086680.2.1 | Tomato | plastid | 57.51 | 56.27 |
| GSMUA_Achr1P04750_001 | Banana | plastid | 57.14 | 55.91 |
| Os01t0637600-01 | Rice | mitochondrion | 53.48 | 54.28 |
| EES03332 | Sorghum | mitochondrion | 52.38 | 54.17 |
| Zm00001d011445_P006 | Maize | mitochondrion | 52.01 | 53.79 |
| TraesCS3D01G223800.1 | Wheat | mitochondrion | 50.55 | 51.11 |
| TraesCS3B01G258700.1 | Wheat | plastid | 49.82 | 50.37 |
| KRG94880 | Soybean | plastid | 36.26 | 49.75 |
| Os01t0636600-01 | Rice | plastid | 45.79 | 46.47 |
| AT1G15390.1 | Thale cress | plastid | 24.18 | 24.54 |
Protein Annotations
| MapMan:17.7.6.1 | Gene3D:3.90.45.10 | PDB:3CPM | PDB:3M6O | PDB:3M6P | PDB:3M6Q |
| PDB:3M6R | PDB:3O3J | PDB:3PN2 | PDB:3PN3 | PDB:3PN4 | PDB:3PN5 |
| PDB:3PN6 | EntrezGene:831318 | ProteinID:AED92059.1 | ProteinID:AED92060.1 | EMBL:AF269165 | ProteinID:ANM71170.1 |
| ArrayExpress:AT5G14660 | EnsemblPlantsGene:AT5G14660 | RefSeq:AT5G14660 | TAIR:AT5G14660 | RefSeq:AT5G14660-TAIR-G | EnsemblPlants:AT5G14660.1 |
| TAIR:AT5G14660.1 | EMBL:AY050879 | EMBL:AY085417 | EMBL:AY096673 | Unigene:At.5087 | ProteinID:CAB87633.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006412 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0018206 | GO:GO:0019538 | GO:GO:0031365 | GO:GO:0042586 | GO:GO:0043686 |
| GO:GO:0046872 | InterPro:IPR036821 | HAMAP:MF_00163 | RefSeq:NP_001332718.1 | RefSeq:NP_196970.1 | RefSeq:NP_850821.1 |
| Symbol:PDF1B | PFAM:PF01327 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01576 | PANTHER:PTHR10458 | PANTHER:PTHR10458:SF2 | InterPro:Peptide_deformylase |
| InterPro:Peptide_deformylase_sf | UniProt:Q9FUZ2 | SUPFAM:SSF56420 | TIGRFAMs:TIGR00079 | UniParc:UPI00000017BE | SEG:seg |
Description
PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
Coordinates
chr5:-:4726641..4728746
Molecular Weight (calculated)
30612.0 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.300
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.