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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX69568 Canola plastid 98.18 97.12
AT5G14660.1 Thale cress plastid 87.27 87.91
TraesCS3A01G225700.1 Wheat cytosol 37.09 63.35
VIT_14s0066g01070.t01 Wine grape plastid 59.64 59.64
PGSC0003DMT400001396 Potato plastid 59.64 59.21
Solyc02g086680.2.1 Tomato plastid 58.55 57.71
KRG94095 Soybean mitochondrion, plastid 56.0 57.68
GSMUA_Achr1P04750_001 Banana plastid 58.18 57.35
EES03332 Sorghum mitochondrion 53.45 55.68
Zm00001d011445_P006 Maize mitochondrion 53.09 55.3
Os01t0637600-01 Rice mitochondrion 53.45 54.65
TraesCS3D01G223800.1 Wheat mitochondrion 51.27 52.22
TraesCS3B01G258700.1 Wheat plastid 50.55 51.48
KRG94880 Soybean plastid 35.27 48.74
Os01t0636600-01 Rice plastid 46.91 47.96
CDY39642 Canola mitochondrion 23.64 26.97
CDX81711 Canola mitochondrion 24.36 26.17
CDY55984 Canola mitochondrion 24.0 25.68
CDY36556 Canola mitochondrion 22.55 23.85
Protein Annotations
MapMan:17.7.6.1Gene3D:3.90.45.10GO:A0A078FA43UniProt:A0A078FA43EnsemblPlants:CDY09874ProteinID:CDY09874
ProteinID:CDY09874.1ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016787GO:GO:0019538
GO:GO:0042586GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00031625001InterPro:IPR036821HAMAP:MF_00163PFAM:PF01327
PRINTS:PR01576PANTHER:PTHR10458PANTHER:PTHR10458:SF2InterPro:Peptide_deformylaseInterPro:Peptide_deformylase_sfSUPFAM:SSF56420
TIGRFAMs:TIGR00079UniParc:UPI0004EDF4BBSEG:seg:::
Description
BnaC09g42870DPeptide deformylase [Source:UniProtKB/TrEMBL;Acc:A0A078FA43]
Coordinates
chrLK031999:-:747804..750002
Molecular Weight (calculated)
30551.8 Da
IEP (calculated)
8.595
GRAVY (calculated)
-0.287
Length
275 amino acids
Sequence
(BLAST)
001: MAVCNCFLQA PPLSRFLSPV FSRRATNLFP GCGQLKSTVM FSSSSAANRT GPLTSPVRAE VKRVSRKESE IASASDLQFE TPLKIVEYPD PILRAKNKRI
101: GVFDENLKNL ADAMFDVMYK TDGIGLSAPQ VGLNVQLMVF NPAGESGEGE EIVLVNPKIN KYSDKLVPFN EGCLSFPGIY ADVVRPQSVK IDARDITGAR
201: FSISLSRLPA RIFQHEYDHL EGVLFFDRMT DDVLDTIREE LEALEKKYEE KTGLPSPEKV QARQKRKAGV GFGKR
Best Arabidopsis Sequence Match ( AT5G14660.2 )
(BLAST)
001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR
Arabidopsis Description
PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.