Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 7
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22160430
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G223800.1 | Wheat | mitochondrion | 95.93 | 95.93 |
| TraesCS3A01G225700.1 | Wheat | cytosol | 57.04 | 95.65 |
| Os01t0637600-01 | Rice | mitochondrion | 75.56 | 75.84 |
| EES03332 | Sorghum | mitochondrion | 71.85 | 73.48 |
| Zm00001d011445_P006 | Maize | mitochondrion | 67.04 | 68.56 |
| Os01t0636600-01 | Rice | plastid | 62.96 | 63.2 |
| GSMUA_Achr1P04750_001 | Banana | plastid | 55.19 | 53.41 |
| KRG94095 | Soybean | mitochondrion, plastid | 50.0 | 50.56 |
| CDY09874 | Canola | plastid | 51.48 | 50.55 |
| VIT_14s0066g01070.t01 | Wine grape | plastid | 51.11 | 50.18 |
| Bra008747.1-P | Field mustard | plastid | 51.48 | 50.18 |
| AT5G14660.1 | Thale cress | plastid | 50.37 | 49.82 |
| CDX69568 | Canola | plastid | 51.11 | 49.64 |
| PGSC0003DMT400001396 | Potato | plastid | 49.63 | 48.38 |
| Solyc02g086680.2.1 | Tomato | plastid | 49.63 | 48.03 |
| KRG94880 | Soybean | plastid | 34.44 | 46.73 |
| TraesCS3B01G234300.1 | Wheat | plastid | 24.44 | 25.58 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G258700.1 | EnsemblPlantsGene:TraesCS3B01G258700 | Gene3D:3.90.45.10 | HAMAP:MF_00163 | InterPro:IPR036821 | InterPro:Peptide_deformylase |
| InterPro:Peptide_deformylase_sf | ncoils:Coil | PANTHER:PTHR10458 | PANTHER:PTHR10458:SF2 | PFAM:PF01327 | PRINTS:PR01576 |
| SUPFAM:SSF56420 | TIGR:cd00487 | TIGRFAMs:TIGR00079 | MapMan:17.7.6.1 | : | : |
Description
No Description!
Coordinates
chr3B:-:416282273..416286495
Molecular Weight (calculated)
30138.0 Da
IEP (calculated)
6.681
GRAVY (calculated)
-0.278
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MATACFHLRL CPRFRAFASF SSRPLLATHP RTLPLRRTGP ATPLAARTRR GFGSSMAAAP PNEDDDFATA ADLRFDQPLK VVQYPDPVLR ARNKRINTFD
101: DNLRSLADEM FDVMYKTDGI GLSAPQVGVN VQLMVFNPAG VKGEGEEIVL VNPVVYKFSK RLSVYEEGCL SFPGIYANVL RPDTVEIDAQ DASGAKIKVK
201: LSELSARVFQ HEFDHLQGIL FFDRMTMDVV ESIHEQLKNL EDKYEEITGQ ASPETISNYR GTKDVASFSR
101: DNLRSLADEM FDVMYKTDGI GLSAPQVGVN VQLMVFNPAG VKGEGEEIVL VNPVVYKFSK RLSVYEEGCL SFPGIYANVL RPDTVEIDAQ DASGAKIKVK
201: LSELSARVFQ HEFDHLQGIL FFDRMTMDVV ESIHEQLKNL EDKYEEITGQ ASPETISNYR GTKDVASFSR
001: MAVCNCFLQA PPLSRILLPV LSRRATTLSA GYGRLKSTVT FCSTVNRTSP LTSSVRAEVK RVSRKDDKVA SATDVQFETP LKIVEYPDPI LRAKNKRIDI
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR
101: FDENLKNLVD AMFDVMYKTD GIGLSAPQVG LNVQLMVFNP AGEPGEGKEI VLVNPKIKKY SDKLVPFDEG CLSFPGIYAE VVRPQSVKID ARDITGERFS
201: ISLSRLPARI FQHEYDHLEG VLFFDRMTDQ VLDSIREELE ALEKKYEEKT GLPSPERVEA RQKRKAGVGF GKR
Arabidopsis Description
PDF1BPeptide deformylase 1B, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FUZ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.