Factsheet for VIT_14s0030g01680.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g06590.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	VIT_06s0004g06590.t01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066630.1.1	Tomato	nucleus	50.22	78.62
PGSC0003DMT400018358	Potato	nucleus	69.6	72.81
PGSC0003DMT400001225	Potato	nucleus	67.4	70.83
Solyc06g074720.2.1	Tomato	nucleus	67.84	70.32
KRH38103	Soybean	nucleus	65.64	69.63
KRH71854	Soybean	nucleus	63.0	67.77
KXG34111	Sorghum	cytosol	59.91	63.26
GSMUA_Achr3P18350_001	Banana	nucleus	60.79	63.01
CDY04918	Canola	cytosol, plastid	60.35	62.56
Bra028783.1-P	Field mustard	cytosol, plastid	59.91	62.1
CDY14147	Canola	plastid	59.91	60.99
CDY44869	Canola	cytosol, plastid	59.47	60.54
AT5G04600.1	Thale cress	cytosol, plastid	59.03	60.36
Os08t0412200-01	Rice	nucleus	56.83	60.28
Bra009440.1-P	Field mustard	cytosol, plastid	59.03	60.09
CDX70212	Canola	cytosol, plastid	59.03	60.09
TraesCS6A01G011400.1	Wheat	nucleus	55.95	59.35
TraesCS6D01G014200.1	Wheat	nucleus	55.95	59.35
TraesCS6B01G017700.1	Wheat	nucleus	55.51	58.88
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.07	58.69
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.63	57.94
Zm00001d050300_P002	Maize	mitochondrion, nucleus	54.63	57.67
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	53.3	56.54
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	55.07	56.05
OQU80418	Sorghum	nucleus	39.21	55.97
HORVU6Hr1G002240.2	Barley	nucleus	55.51	52.28
KRH40007	Soybean	cytosol	18.94	48.31
GSMUA_AchrUn_...	Banana	nucleus	62.11	47.32

Protein Annotations

EntrezGene:100255455	wikigene:100255455	MapMan:17.1.2.2.1.7	Gene3D:3.30.70.330	ProteinID:CCB58100	ProteinID:CCB58100.1
ncoils:Coil	UniProt:F6HTT9	EMBL:FN596249	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100255455	wikigene:LOC100255455	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44517	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TIGR:TC58340	UniParc:UPI0002109958	ArrayExpress:VIT_14s0030g01680	EnsemblPlantsGene:VIT_14s0030g01680	EnsemblPlants:VIT_14s0030g01680.t01	unigene:Vvi.643
RefSeq:XP_002277092	RefSeq:XP_002277092.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:6505322..6526040

Molecular Weight (calculated)

25960.8 Da

IEP (calculated)

10.641

GRAVY (calculated)

-0.747

Length

227 amino acids

Sequence
(BLAST)

001: MTLRDGSTVL LQMGTKAKKA MIKKSKKGSS KLSVPGHKKA AADFLPLEGG PGHELPEQEP PKNTGTVLYI GRIPHGFYEN EMEGFFKQFG AVKRLRIARN
101: KKTGKSKHFG FIEFESPEVA KIVAECMHNH LLFEHILQVH VVPPEHVHPK LWKGVNRLYK PLDRVQIERK RQNKERTLEK QKKLVEGIGK RDQKRRKRIE
201: AAGIDYECPE IVGISRPASK KIRFDEE

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.