CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98291
KRH30312

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	KRG98291	AT5G58720.1	21798944
AT5G04600.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38103	Soybean	nucleus	93.36	92.06
Solyc11g066630.1.1	Tomato	nucleus	54.98	80.0
PGSC0003DMT400001225	Potato	nucleus	69.19	67.59
PGSC0003DMT400018358	Potato	nucleus	69.19	67.28
Solyc06g074720.2.1	Tomato	nucleus	67.77	65.3
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	67.77	63.0
Bra028783.1-P	Field mustard	cytosol, plastid	64.93	62.56
CDY04918	Canola	cytosol, plastid	64.93	62.56
CDY14147	Canola	plastid	65.4	61.88
CDY44869	Canola	cytosol, plastid	65.4	61.88
Bra009440.1-P	Field mustard	cytosol, plastid	64.93	61.44
CDX70212	Canola	cytosol, plastid	64.93	61.44
AT5G04600.1	Thale cress	cytosol, plastid	63.98	60.81
Os08t0412200-01	Rice	nucleus	61.14	60.28
KXG34111	Sorghum	cytosol	61.14	60.0
GSMUA_Achr3P18350_001	Banana	nucleus	61.61	59.36
KRH40007	Soybean	cytosol	24.64	58.43
TraesCS6D01G014200.1	Wheat	nucleus	57.35	56.54
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	57.35	56.54
TraesCS6A01G011400.1	Wheat	nucleus	57.35	56.54
TraesCS6B01G017700.1	Wheat	nucleus	56.87	56.07
Zm00001d050300_P002	Maize	mitochondrion, nucleus	56.87	55.81
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.92	55.4
OQU80418	Sorghum	nucleus	40.28	53.46
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	53.55	52.8
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	55.45	52.47
HORVU6Hr1G002240.2	Barley	nucleus	56.87	49.79
GSMUA_AchrUn_...	Banana	nucleus	61.14	43.29

Protein Annotations

EntrezGene:100814276	MapMan:17.1.2.2.1.7	Gene3D:3.30.70.330	EMBL:ACUP02001091	EnsemblPlantsGene:GLYMA_02G173000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1JG14	InterPro:IPR000504	InterPro:IPR012677
ProteinID:KRH71853.1	EnsemblPlants:KRH71854	ProteinID:KRH71854	ProteinID:KRH71854.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44517	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000233713E	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:27521794..27524920

Molecular Weight (calculated)

24515.7 Da

IEP (calculated)

10.411

GRAVY (calculated)

-0.833

Length

211 amino acids

Sequence
(BLAST)

001: MGKKAKKAMN NLKRASFNNK PSEGADFLPL EGGPARKLAA SQQKPPENTA TVLYVGRIPH GFYEKEMEGY FGQFGTIKRL RIARNKKSGK SRHFGFIEFE
101: SPEVAKIVAD TMHNYLLFEH LLQVYVIPPE HVHPRIWRGF NYHYKPLDSV QIERKRHDKE RTLKEHQKLV DKVLKHDQKR RKRIEAAGID YECPEIVGNI
201: QPAPKKIKFE D

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.