Factsheet for Solyc06g074720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g007110.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	Solyc06g007110.2.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018358	Potato	nucleus	91.78	92.63
Solyc11g066630.1.1	Tomato	nucleus	57.08	86.21
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	70.32	67.84
KRH71854	Soybean	nucleus	65.3	67.77
KRH38103	Soybean	nucleus	66.21	67.76
GSMUA_Achr3P18350_001	Banana	nucleus	59.36	59.36
KXG34111	Sorghum	cytosol	57.53	58.6
Zm00001d050300_P002	Maize	mitochondrion, nucleus	56.16	57.21
CDY04918	Canola	cytosol, plastid	57.08	57.08
Bra028783.1-P	Field mustard	cytosol, plastid	56.62	56.62
Os08t0412200-01	Rice	nucleus	54.79	56.07
Bra009440.1-P	Field mustard	cytosol, plastid	57.08	56.05
CDY44869	Canola	cytosol, plastid	57.08	56.05
CDX70212	Canola	cytosol, plastid	57.08	56.05
CDY14147	Canola	plastid	57.08	56.05
AT5G04600.1	Thale cress	cytosol, plastid	55.25	54.5
OQU80418	Sorghum	nucleus	39.27	54.09
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.05	53.52
TraesCS6A01G011400.1	Wheat	nucleus	52.05	53.27
TraesCS6D01G014200.1	Wheat	nucleus	52.05	53.27
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	52.05	53.27
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.6	52.8
TraesCS6B01G017700.1	Wheat	nucleus	51.6	52.8
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	50.68	49.78
HORVU6Hr1G002240.2	Barley	nucleus	52.05	47.3
KRH40007	Soybean	cytosol	18.72	46.07
GSMUA_AchrUn_...	Banana	nucleus	59.82	43.96

Protein Annotations

EnsemblPlants:Solyc06g074720.2.1	EnsemblPlantsGene:Solyc06g074720.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44517	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000276678F	UniProt:K4C9J0	MapMan:17.1.2.2.1.7	:	:	:

Description

No Description!

Coordinates

chr6:+:46249145..46253217

Molecular Weight (calculated)

25554.1 Da

IEP (calculated)

10.581

GRAVY (calculated)

-0.793

Length

219 amino acids

Sequence
(BLAST)

001: MGVKARKKAI TKKLKKGASD FSASSASKDE AREFLPLEGG PAQKLPKTEV RENKATVLYI GRIPHGFYEN EMEGFFKQFG TIKRLRIARN KKTGKSKHFG
101: FIEFESPEVA KVVAETMHNY LLFEHLLQVQ LIPPEHVHPR LWKGVNRWYK PLDWVKIERK RQDKERTLDD HKKLVEGILK RDKKRRKRIE AAGIDYECPE
201: MVTVGDYSTR IRKVTNELH

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.