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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G017700.1 Wheat nucleus 99.53 99.53
TraesCS6A01G011400.1 Wheat nucleus 99.53 99.53
TraesCS2D01G187400.1 Wheat mitochondrion, nucleus 94.39 90.58
HORVU6Hr1G002240.2 Barley nucleus 96.26 85.48
Os08t0412200-01 Rice nucleus 82.71 82.71
KXG34111 Sorghum cytosol 82.24 81.86
Zm00001d050300_P002 Maize mitochondrion, nucleus 74.77 74.42
OQU80418 Sorghum nucleus 54.21 72.96
Solyc11g066630.1.1 Tomato nucleus 43.46 64.14
GSMUA_Achr3P18350_001 Banana nucleus 61.22 59.82
KRH38103 Soybean nucleus 57.94 57.94
KRH71854 Soybean nucleus 56.54 57.35
VIT_14s0030g01680.t01 Wine grape cytosol, mitochondrion, nucleus 59.35 55.95
CDY04918 Canola cytosol, plastid 56.54 55.25
Bra028783.1-P Field mustard cytosol, plastid 56.54 55.25
PGSC0003DMT400018358 Potato nucleus 55.61 54.84
CDY14147 Canola plastid 56.54 54.26
PGSC0003DMT400001225 Potato nucleus 54.67 54.17
CDY44869 Canola cytosol, plastid 56.07 53.81
CDX70212 Canola cytosol, plastid 56.07 53.81
Bra009440.1-P Field mustard cytosol, plastid 56.07 53.81
AT5G04600.1 Thale cress cytosol, plastid 54.21 52.25
Solyc06g074720.2.1 Tomato nucleus 53.27 52.05
GSMUA_AchrUn_... Banana nucleus 61.22 43.96
KRH40007 Soybean cytosol 15.89 38.2
Protein Annotations
EnsemblPlants:TraesCS6D01G014200.1EnsemblPlantsGene:TraesCS6D01G014200Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_domPANTHER:PTHR44517
PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360SUPFAM:SSF54928TIGR:cd12307
MapMan:17.1.2.2.1.7:::::
Description
No Description!
Coordinates
chr6D:-:5976531..5978563
Molecular Weight (calculated)
24763.1 Da
IEP (calculated)
10.608
GRAVY (calculated)
-0.890
Length
214 amino acids
Sequence
(BLAST)
001: MGLRDKKRNQ RRVLSRRSAG PKTGEGKDFL PLEGKEQRVR EKKQPEEPES TATVLYIGHI PHGFYEDQMQ GFFQQFGAVK RVRVARNRKT GKSKHYGFIE
101: FENPEVAKIV ADEMNNYLLF EHTLQIAPVP PEKVHAKLWK GVRKGFIPVD RVAIERKRLS KDKTVEEHKK MLEGIVKRDE KRRKRIKAAG IDYECPALIG
201: SVQPSAKKIK FDED
Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.