Factsheet for PGSC0003DMT400001225

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010646

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	PGSC0003DMT400010646	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066630.1.1	Tomato	nucleus	65.74	97.93
PGSC0003DMT400018358	Potato	nucleus	87.04	86.64
KRH71854	Soybean	nucleus	67.59	69.19
KRH38103	Soybean	nucleus	68.06	68.69
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	70.83	67.4
GSMUA_Achr3P18350_001	Banana	nucleus	62.5	61.64
Bra028783.1-P	Field mustard	cytosol, plastid	61.57	60.73
CDY04918	Canola	cytosol, plastid	61.57	60.73
CDY14147	Canola	plastid	62.04	60.09
Bra009440.1-P	Field mustard	cytosol, plastid	61.11	59.19
CDX70212	Canola	cytosol, plastid	61.11	59.19
CDY44869	Canola	cytosol, plastid	61.11	59.19
KXG34111	Sorghum	cytosol	58.8	59.07
Os08t0412200-01	Rice	nucleus	57.41	57.94
AT5G04600.1	Thale cress	cytosol, plastid	58.33	56.76
Zm00001d050300_P002	Maize	mitochondrion, nucleus	55.56	55.81
TraesCS6A01G011400.1	Wheat	nucleus	54.17	54.67
TraesCS6D01G014200.1	Wheat	nucleus	54.17	54.67
TraesCS6B01G017700.1	Wheat	nucleus	53.7	54.21
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.78	53.27
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.31	53.05
OQU80418	Sorghum	nucleus	38.89	52.83
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	50.46	50.93
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	51.39	49.78
HORVU6Hr1G002240.2	Barley	nucleus	53.7	48.13
GSMUA_AchrUn_...	Banana	nucleus	61.57	44.63
KRH40007	Soybean	cytosol	17.59	42.7

Protein Annotations

EntrezGene:102584284	MapMan:17.1.2.2.1.7	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZI42	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400000462	PGSC:PGSC0003DMG400000462	EnsemblPlants:PGSC0003DMT400001225	PFscan:PS50102	PANTHER:PTHR44517
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294E0E0	RefSeq:XP_006349058.1
SEG:seg	:	:	:	:	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000462]

Coordinates

chr11:-:39477399..39484463

Molecular Weight (calculated)

25009.6 Da

IEP (calculated)

10.728

GRAVY (calculated)

-0.764

Length

216 amino acids

Sequence
(BLAST)

001: MGAKGRKKSI TKKLKKGASE FSASSVSKDK APDFLPLEGG PARKLPDTEV RESKSTILYI GRIPHGFYEN EMEGFFKQFG TIKRLRLARN KKTGKSKHFG
101: FIEFESPEVA KVVADTMHNY LLFEHLLQVR LIPPEHVHPK LWKGVNRWYK PLDWVKIERK RQDKERTLEE HNKLVGEILK RDKKRRKRIE AAGIDYKCPE
201: MVGAIQAAPK KIRFAD

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.