CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU86087

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	OQU86087	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050300_P002	Maize	mitochondrion, nucleus	85.58	85.58
TraesCS6A01G011400.1	Wheat	nucleus	82.33	82.71
Os08t0412200-01	Rice	nucleus	82.33	82.71
TraesCS6D01G014200.1	Wheat	nucleus	81.86	82.24
TraesCS6B01G017700.1	Wheat	nucleus	81.4	81.78
OQU80418	Sorghum	nucleus	60.47	81.76
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	80.47	80.84
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	80.0	80.75
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	80.93	78.03
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	74.88	75.23
HORVU6Hr1G002240.2	Barley	nucleus	81.4	72.61
Solyc11g066630.1.1	Tomato	nucleus	46.98	69.66
GSMUA_Achr3P18350_001	Banana	nucleus	64.19	63.01
KRH38103	Soybean	nucleus	62.33	62.62
KRH71854	Soybean	nucleus	60.0	61.14
PGSC0003DMT400018358	Potato	nucleus	60.93	60.37
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	63.26	59.91
PGSC0003DMT400001225	Potato	nucleus	59.07	58.8
Solyc06g074720.2.1	Tomato	nucleus	58.6	57.53
CDY04918	Canola	cytosol, plastid	55.81	54.79
Bra028783.1-P	Field mustard	cytosol, plastid	55.81	54.79
CDY44869	Canola	cytosol, plastid	56.74	54.71
CDX70212	Canola	cytosol, plastid	56.28	54.26
Bra009440.1-P	Field mustard	cytosol, plastid	56.28	54.26
CDY14147	Canola	plastid	55.81	53.81
AT5G04600.1	Thale cress	cytosol, plastid	53.95	52.25
GSMUA_AchrUn_...	Banana	nucleus	64.19	46.31
KRH40007	Soybean	cytosol	17.67	42.7

Protein Annotations

EnsemblPlants:KXG34111	EnsemblPlantsGene:SORBI_3003G424800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44517	PFAM:PF00076	PFscan:PS50102	ProteinID:KXG34110.1	ProteinID:KXG34111	ProteinID:KXG34111.1
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001C80B3B	UniProt:A0A1B6Q872	MapMan:17.1.2.2.1.7	:

Description

hypothetical protein

Coordinates

chr3:+:72867202..72870486

Molecular Weight (calculated)

24842.3 Da

IEP (calculated)

10.663

GRAVY (calculated)

-0.795

Length

215 amino acids

Sequence
(BLAST)

001: MGMRDKKRNQ KRVLARRTAA PRAGEGKDFL PLEGGPGKKL RKVQEPEEPE NTATVVYIGH IPHGFYEDEM QGFFKQFGDI KRLRIARNRK TGKSKHYGFI
101: EFESPVVAKI VADEMNNYLL FEHTLQVSLV PTEKVHPKLW KGVRRGFIPI DRVAIERKRH NKDKTVEEHK KMVEGIVKRD EKRRKRIKAA GIDYECPALI
201: GSIQPSAKKI KFDEV

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.