CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDY02832
CDY32688
CDY61025

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	CDX71154	AT5G58720.1	21798944
AT5G04600.1	CDY02832	AT5G58720.1	21798944
AT5G04600.1	CDY32688	AT5G58720.1	21798944
AT5G04600.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009440.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDY44869	Canola	cytosol, plastid	98.21	98.21
CDY14147	Canola	plastid	95.52	95.52
CDY04918	Canola	cytosol, plastid	92.38	94.06
AT5G04600.1	Thale cress	cytosol, plastid	82.96	83.33
Solyc11g066630.1.1	Tomato	nucleus	43.05	66.21
KRH38103	Soybean	nucleus	62.33	64.95
KRH71854	Soybean	nucleus	61.44	64.93
PGSC0003DMT400001225	Potato	nucleus	59.19	61.11
PGSC0003DMT400018358	Potato	nucleus	57.85	59.45
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	60.09	59.03
GSMUA_Achr3P18350_001	Banana	nucleus	56.95	57.99
Solyc06g074720.2.1	Tomato	nucleus	56.05	57.08
KXG34111	Sorghum	cytosol	54.26	56.28
TraesCS6D01G014200.1	Wheat	nucleus	53.81	56.07
TraesCS6B01G017700.1	Wheat	nucleus	53.36	55.61
TraesCS6A01G011400.1	Wheat	nucleus	53.36	55.61
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.91	55.4
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.47	54.67
Os08t0412200-01	Rice	nucleus	51.57	53.74
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	52.02	52.02
Zm00001d050300_P002	Maize	mitochondrion, nucleus	49.78	51.63
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	49.33	51.4
HORVU6Hr1G002240.2	Barley	nucleus	53.36	49.38
OQU80418	Sorghum	nucleus	34.53	48.43
KRH40007	Soybean	cytosol	17.49	43.82
GSMUA_AchrUn_...	Banana	nucleus	55.16	41.28

Protein Annotations

MapMan:17.1.2.2.1.7	Gene3D:3.30.70.330	GO:A0A078C0D7	EnsemblPlants:CDX70212	ProteinID:CDX70212	ProteinID:CDX70212.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00136335001	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nop15_RRM	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44517
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254787D	SEG:seg

Description

BnaA10g25610D

Coordinates

chrLK031790:-:3565487..3567073

Molecular Weight (calculated)

25316.8 Da

IEP (calculated)

10.571

GRAVY (calculated)

-0.697

Length

223 amino acids

Sequence
(BLAST)

001: MGAKAKKALK KNMKKITASA AASSSSQLAA PQNTKPSADF LPLEGGPARK APATKTIENK ATVLYIGRLP HGFYETEIEA FFTQFGTVKR VRVARNKKTG
101: KSKHFGFIQF EDPEVAEIAA GAMNDYLLLE HMLQVRVIPP EDVKPNLWKG FKCQYKPVDW VQIERKQHNK ERTLEEHRKM LNKVVKRDQK RRKRIEAAGI
201: EYQCPELVGN TQPLPKKIKF SED

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.