Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G150300.2 | |
| TraesCS3B01G177300.1 | |
| TraesCS3D01G158200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04600.1 | TraesCS3A01G150300.2 | AT5G58720.1 | 21798944 |
| AT5G04600.1 | TraesCS3B01G177300.1 | AT5G58720.1 | 21798944 |
| AT5G04600.1 | TraesCS3D01G158200.1 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G014200.1 | Wheat | nucleus | 99.53 | 99.53 |
| TraesCS6A01G011400.1 | Wheat | nucleus | 99.07 | 99.07 |
| TraesCS2B01G205700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 91.12 | 91.55 |
| HORVU6Hr1G002240.2 | Barley | nucleus | 96.26 | 85.48 |
| Os08t0412200-01 | Rice | nucleus | 83.18 | 83.18 |
| KXG34111 | Sorghum | cytosol | 81.78 | 81.4 |
| Zm00001d050300_P002 | Maize | mitochondrion, nucleus | 74.3 | 73.95 |
| OQU80418 | Sorghum | nucleus | 54.21 | 72.96 |
| Solyc11g066630.1.1 | Tomato | nucleus | 42.99 | 63.45 |
| GSMUA_Achr3P18350_001 | Banana | nucleus | 60.75 | 59.36 |
| KRH38103 | Soybean | nucleus | 57.48 | 57.48 |
| KRH71854 | Soybean | nucleus | 56.07 | 56.87 |
| VIT_14s0030g01680.t01 | Wine grape | cytosol, mitochondrion, nucleus | 58.88 | 55.51 |
| CDY04918 | Canola | cytosol, plastid | 56.07 | 54.79 |
| Bra028783.1-P | Field mustard | cytosol, plastid | 56.07 | 54.79 |
| PGSC0003DMT400018358 | Potato | nucleus | 55.14 | 54.38 |
| CDY14147 | Canola | plastid | 56.07 | 53.81 |
| PGSC0003DMT400001225 | Potato | nucleus | 54.21 | 53.7 |
| CDY44869 | Canola | cytosol, plastid | 55.61 | 53.36 |
| CDX70212 | Canola | cytosol, plastid | 55.61 | 53.36 |
| Bra009440.1-P | Field mustard | cytosol, plastid | 55.61 | 53.36 |
| AT5G04600.1 | Thale cress | cytosol, plastid | 54.67 | 52.7 |
| Solyc06g074720.2.1 | Tomato | nucleus | 52.8 | 51.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.75 | 43.62 |
| KRH40007 | Soybean | cytosol | 15.89 | 38.2 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G017700.1 | EnsemblPlantsGene:TraesCS6B01G017700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44517 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12307 |
| MapMan:17.1.2.2.1.7 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:11286256..11288917
Molecular Weight (calculated)
24791.1 Da
IEP (calculated)
10.629
GRAVY (calculated)
-0.893
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLRDKKRNQ RRVLSRRSAG PKTGEGKDFL PLEGKEQRVR EKKQPEEPES TATVLYIGHI PHGFYEDQMQ GFFQQFGAVK RVRVARNRKT GKSKHYGFIE
101: FENPEVAKIV ADEMNNYLLF EHTLQIAPVP PEKVHAKLWK GVRKGFIPVD RVAIERRRLS KDKTVEEHKK MLEGIVKRDE KRRKRIKAAG IDYECPALIG
201: SVQPSAKKIK FDED
101: FENPEVAKIV ADEMNNYLLF EHTLQIAPVP PEKVHAKLWK GVRKGFIPVD RVAIERRRLS KDKTVEEHKK MLEGIVKRDE KRRKRIKAAG IDYECPALIG
201: SVQPSAKKIK FDED
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.