Factsheet for TraesCS6A01G011400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G150300.2
TraesCS3B01G177300.1
TraesCS3D01G158200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	TraesCS3A01G150300.2	AT5G58720.1	21798944
AT5G04600.1	TraesCS3B01G177300.1	AT5G58720.1	21798944
AT5G04600.1	TraesCS3D01G158200.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G014200.1	Wheat	nucleus	99.53	99.53
TraesCS6B01G017700.1	Wheat	nucleus	99.07	99.07
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	93.46	93.46
HORVU6Hr1G002240.2	Barley	nucleus	95.79	85.06
Os08t0412200-01	Rice	nucleus	83.18	83.18
KXG34111	Sorghum	cytosol	82.71	82.33
Zm00001d050300_P002	Maize	mitochondrion, nucleus	74.3	73.95
OQU80418	Sorghum	nucleus	54.67	73.58
Solyc11g066630.1.1	Tomato	nucleus	43.46	64.14
GSMUA_Achr3P18350_001	Banana	nucleus	61.22	59.82
KRH38103	Soybean	nucleus	57.94	57.94
KRH71854	Soybean	nucleus	56.54	57.35
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	59.35	55.95
PGSC0003DMT400018358	Potato	nucleus	55.61	54.84
CDY04918	Canola	cytosol, plastid	56.07	54.79
Bra028783.1-P	Field mustard	cytosol, plastid	56.07	54.79
PGSC0003DMT400001225	Potato	nucleus	54.67	54.17
CDY14147	Canola	plastid	56.07	53.81
CDY44869	Canola	cytosol, plastid	55.61	53.36
CDX70212	Canola	cytosol, plastid	55.61	53.36
Bra009440.1-P	Field mustard	cytosol, plastid	55.61	53.36
Solyc06g074720.2.1	Tomato	nucleus	53.27	52.05
AT5G04600.1	Thale cress	cytosol, plastid	53.74	51.8
GSMUA_AchrUn_...	Banana	nucleus	61.22	43.96
KRH40007	Soybean	cytosol	15.89	38.2

Protein Annotations

EnsemblPlants:TraesCS6A01G011400.1	EnsemblPlantsGene:TraesCS6A01G011400	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44517
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	TIGR:cd12307
MapMan:17.1.2.2.1.7	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:5319300..5321608

Molecular Weight (calculated)

24777.1 Da

IEP (calculated)

10.608

GRAVY (calculated)

-0.888

Length

214 amino acids

Sequence
(BLAST)

001: MGLRDKKRNQ RRVLSRRSAG PKTGEGKDFL PLEGKEQRVR EKKQPEEPES TATVLYIGHI PHGFYEDQMQ GFFQQFGAVK RVRVARNRKT GKSKHYGFIE
101: FENPEVAKIV ADEMNNYLLF EHTLQIAPVP PEKVHAKLWK GVRKGFIPID RVAIERKRLS KDKTVEEHKK MLEGIVKRDE KRRKRIKAAG IDYECPALIG
201: SVQPSAKKIK FDED

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.