Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g007110.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04600.1 | Solyc06g007110.2.1 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001225 | Potato | nucleus | 97.93 | 65.74 |
| Solyc06g074720.2.1 | Tomato | nucleus | 86.21 | 57.08 |
| KRH71854 | Soybean | nucleus | 80.0 | 54.98 |
| KRH38103 | Soybean | nucleus | 80.0 | 54.21 |
| VIT_14s0030g01680.t01 | Wine grape | cytosol, mitochondrion, nucleus | 78.62 | 50.22 |
| KXG34111 | Sorghum | cytosol | 69.66 | 46.98 |
| GSMUA_Achr3P18350_001 | Banana | nucleus | 70.34 | 46.58 |
| Os08t0412200-01 | Rice | nucleus | 67.59 | 45.79 |
| Bra028783.1-P | Field mustard | cytosol, plastid | 66.9 | 44.29 |
| CDY04918 | Canola | cytosol, plastid | 66.9 | 44.29 |
| OQU80418 | Sorghum | nucleus | 48.28 | 44.03 |
| CDY14147 | Canola | plastid | 67.59 | 43.95 |
| TraesCS6D01G014200.1 | Wheat | nucleus | 64.14 | 43.46 |
| TraesCS6A01G011400.1 | Wheat | nucleus | 64.14 | 43.46 |
| Zm00001d050300_P002 | Maize | mitochondrion, nucleus | 64.14 | 43.26 |
| CDY44869 | Canola | cytosol, plastid | 66.21 | 43.05 |
| CDX70212 | Canola | cytosol, plastid | 66.21 | 43.05 |
| Bra009440.1-P | Field mustard | cytosol, plastid | 66.21 | 43.05 |
| TraesCS6B01G017700.1 | Wheat | nucleus | 63.45 | 42.99 |
| TraesCS2A01G178900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 62.76 | 42.52 |
| TraesCS2B01G205700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 61.38 | 41.78 |
| AT5G04600.1 | Thale cress | cytosol, plastid | 61.38 | 40.09 |
| HORVU2Hr1G033820.10 | Barley | cytosol, mitochondrion, nucleus, plastid | 58.62 | 39.72 |
| TraesCS2D01G187400.1 | Wheat | mitochondrion, nucleus | 60.69 | 39.46 |
| HORVU6Hr1G002240.2 | Barley | nucleus | 64.83 | 39.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 69.66 | 33.89 |
| KRH40007 | Soybean | cytosol | 6.21 | 10.11 |
Protein Annotations
| EnsemblPlants:Solyc11g066630.1.1 | EnsemblPlantsGene:Solyc11g066630.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| ncoils:Coil | PANTHER:PTHR44517 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002769FB2 | UniProt:K4D9S0 | MapMan:17.1.2.2.1.7 | : | : |
Description
No Description!
Coordinates
chr11:-:52399326..52402550
Molecular Weight (calculated)
17306.2 Da
IEP (calculated)
10.699
GRAVY (calculated)
-0.769
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGFFKQFGT IKRLRLARNK KTGKSKHFGF IEFESPEVAK VVADTMHNYL LFEHLLQVRL IPPEHVHPRL WKGVNRWYKP LDWVKIERKR QDKERTLEEH
101: NKLVGEILKR DKKRRKRIEA AGIDYECPEM VGAIQAAPKK IRFTD
101: NKLVGEILKR DKKRRKRIEA AGIDYECPEM VGAIQAAPKK IRFTD
001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED
Arabidopsis Description
AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.