Factsheet for TraesCS2B01G205700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G150300.2
TraesCS3B01G177300.1
TraesCS3D01G158200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	TraesCS3A01G150300.2	AT5G58720.1	21798944
AT5G04600.1	TraesCS3B01G177300.1	AT5G58720.1	21798944
AT5G04600.1	TraesCS3D01G158200.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	92.49	92.06
TraesCS6B01G017700.1	Wheat	nucleus	91.55	91.12
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	94.84	90.58
HORVU2Hr1G033820.10	Barley	cytosol, mitochondrion, nucleus, plastid	90.14	89.72
Os08t0412200-01	Rice	nucleus	82.16	81.78
KXG34111	Sorghum	cytosol	80.75	80.0
Zm00001d050300_P002	Maize	mitochondrion, nucleus	73.24	72.56
OQU80418	Sorghum	nucleus	52.11	69.81
Solyc11g066630.1.1	Tomato	nucleus	41.78	61.38
GSMUA_Achr3P18350_001	Banana	nucleus	61.5	59.82
KRH38103	Soybean	nucleus	56.34	56.07
KRH71854	Soybean	nucleus	55.4	55.92
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	58.69	55.07
PGSC0003DMT400018358	Potato	nucleus	55.87	54.84
CDX70212	Canola	cytosol, plastid	55.4	52.91
Bra009440.1-P	Field mustard	cytosol, plastid	55.4	52.91
CDY04918	Canola	cytosol, plastid	53.99	52.51
Bra028783.1-P	Field mustard	cytosol, plastid	53.99	52.51
CDY14147	Canola	plastid	54.93	52.47
PGSC0003DMT400001225	Potato	nucleus	53.05	52.31
Solyc06g074720.2.1	Tomato	nucleus	53.52	52.05
CDY44869	Canola	cytosol, plastid	54.46	52.02
AT5G04600.1	Thale cress	cytosol, plastid	52.58	50.45
GSMUA_AchrUn_...	Banana	nucleus	61.03	43.62
KRH40007	Soybean	cytosol	15.96	38.2

Protein Annotations

EnsemblPlants:TraesCS2B01G205700.1	EnsemblPlantsGene:TraesCS2B01G205700	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44517
PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928	TIGR:cd12307	MapMan:17.1.2.2.1.7

Description

No Description!

Coordinates

chr2B:+:184772883..184775076

Molecular Weight (calculated)

24718.9 Da

IEP (calculated)

10.515

GRAVY (calculated)

-0.855

Length

213 amino acids

Sequence
(BLAST)

001: MGLRDKKRNQ RRVLSRRSAG PRTGEGKDFL PLEGKEQRIR ERQTEEPENT ATVLYIGHIP HGFYEDQMQG FFQQFGAVKR VRIARNHKTG KSKHYGFIEF
101: ENPEVAKIVA DEMNNYLLFE HTLQIAPVPL EKVHAKLWKG VRKGFVPVDR VAIERKKLSK DKTVEEHKRM LEGIVKRDEN RRKRIKAAGI DYECPALIGS
201: VQPSAKKIKF DED

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.