Factsheet for HORVU2Hr1G033820.10

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G030600.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04600.1	HORVU3Hr1G030600.8	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G205700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	89.72	90.14
TraesCS2A01G178900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	87.38	87.38
TraesCS2D01G187400.1	Wheat	mitochondrion, nucleus	86.45	82.96
Os08t0412200-01	Rice	nucleus	76.64	76.64
KXG34111	Sorghum	cytosol	75.23	74.88
HORVU6Hr1G002240.2	Barley	nucleus	84.11	74.69
Zm00001d050300_P002	Maize	mitochondrion, nucleus	74.77	74.42
OQU80418	Sorghum	nucleus	52.8	71.07
Solyc11g066630.1.1	Tomato	nucleus	39.72	58.62
GSMUA_Achr3P18350_001	Banana	nucleus	57.48	56.16
KRH38103	Soybean	nucleus	54.21	54.21
KRH71854	Soybean	nucleus	52.8	53.55
VIT_14s0030g01680.t01	Wine grape	cytosol, mitochondrion, nucleus	56.54	53.3
PGSC0003DMT400018358	Potato	nucleus	52.8	52.07
Solyc06g074720.2.1	Tomato	nucleus	53.27	52.05
PGSC0003DMT400001225	Potato	nucleus	50.93	50.46
CDX70212	Canola	cytosol, plastid	51.4	49.33
Bra009440.1-P	Field mustard	cytosol, plastid	51.4	49.33
CDY04918	Canola	cytosol, plastid	50.47	49.32
Bra028783.1-P	Field mustard	cytosol, plastid	50.47	49.32
CDY44869	Canola	cytosol, plastid	50.93	48.88
CDY14147	Canola	plastid	50.93	48.88
AT5G04600.1	Thale cress	cytosol, plastid	50.0	48.2
GSMUA_AchrUn_...	Banana	nucleus	57.01	40.94
KRH40007	Soybean	cytosol	15.89	38.2

Protein Annotations

EnsemblPlants:HORVU2Hr1G033820.10	EnsemblPlantsGene:HORVU2Hr1G033820	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44517	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000B487A8D
UniProt:A0A287HMZ5	MapMan:17.1.2.2.1.7	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:135254388..135256447

Molecular Weight (calculated)

24850.2 Da

IEP (calculated)

10.373

GRAVY (calculated)

-0.737

Length

214 amino acids

Sequence
(BLAST)

001: MGLRDKKRNQ RRVLSRRSAG PRTGEGKDFL PLEGKEQRIR EKQLEEPENT ATVLYIGHIP HGFYEDQMQG FFQQFGAVKR VRIARNRKTG KSKHYGFIEF
101: ENPEVAKIVA DEMNNYLLFE HTLQIAPVPL EKVHAKLWKG VRKGFVPVDR VAIERKRLSK DKTVEEHKRM LEGIVKRDEK CRKRIKAAGI DYECPALVSN
201: TLHYCSSQAL LDHI

Best Arabidopsis Sequence Match ( AT5G04600.1 )
(BLAST)

001: MGAKAKKALK KNMKKVAASA SSSQLPLPQN PKPSADFLPL EGGPARKAPV TTPPLQNKAT VLYIGRIPHG FYETEIEAFF SQFGTVKRVR VARNKKTGKS
101: KHFGFIQFED PEVAEIAAGA MNDYLLMEHM LKVHVIEPEN VKPNLWRGFK CNFKPVDSVQ IERRQLNKER TLEEHRKMLQ KIVKKDQKRR KRIEAAGIEY
201: ECPELVGNTQ PVPKRIKFSE ED

Arabidopsis Description

AT5g04600/T32M21_200 [Source:UniProtKB/TrEMBL;Acc:Q9LZ65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.