CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95629
KRG95915
KRG96019
KRH01744
KRH12069
KRH13893
KRH13899
KRH19796
KRH22822
KRH27396
KRH28716
KRH32110
KRH32387
KRH37088
KRH43461
KRH46935
KRH67309
KRH67633
KRH71326
KRH76746

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58720.1	KRG95629	AT2G30580.1	21798944
AT5G58720.1	KRH32110	AT2G30580.1	21798944
AT5G58720.1	KRH67309	AT2G30580.1	21798944
AT5G58720.1	KRH71326	AT2G30580.1	21798944
AT5G58720.1	KRH01744	AT2G43370.1	21798944
AT5G58720.1	KRH46935	AT2G43370.1	21798944
AT5G58720.1	KRG95915	AT3G09630.1	21798944
AT5G58720.1	KRG96019	AT3G09630.1	21798944
AT5G58720.1	KRH19796	AT3G09630.1	21798944
AT5G58720.1	KRH32387	AT3G09630.1	21798944
AT5G58720.1	KRH67633	AT3G09630.1	21798944
AT5G58720.1	KRH12069	AT4G15900.1	10220464
AT5G58720.1	KRH37088	AT4G15900.1	10220464
AT5G58720.1	KRH22822	AT5G22890.1	21798944
AT5G58720.1	KRH13893	AT5G58950.1	21798944
AT5G58720.1	KRH13899	AT5G58950.1	21798944
AT5G58720.1	KRH27396	AT5G58950.1	21798944
AT5G58720.1	KRH43461	AT5G58950.1	21798944
AT5G58720.1	KRH28716	AT5G66460.1	21798944
AT5G58720.1	KRH76746	AT5G66460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98291	Soybean	nucleus	84.96	85.46
GSMUA_Achr7P14310_001	Banana	endoplasmic reticulum, golgi	10.16	55.91
VIT_06s0004g06590.t01	Wine grape	nucleus	46.88	49.08
Zm00001d017254_P002	Maize	cytosol	14.65	48.39
CDX71154	Canola	nucleus	41.41	48.18
PGSC0003DMT400010646	Potato	nucleus	45.31	45.67
CDY32688	Canola	nucleus	44.92	45.19
Solyc06g007110.2.1	Tomato	nucleus	43.95	44.2
Bra020357.1-P	Field mustard	nucleus	44.14	43.21
AT5G58720.1	Thale cress	nucleus	43.75	43.16
CDY61025	Canola	nucleus	41.6	42.86
Bra006747.1-P	Field mustard	nucleus	41.6	42.86
CDY02832	Canola	nucleus	43.36	42.53
GSMUA_Achr7P14320_001	Banana	nucleus	26.95	31.94
TraesCS3B01G177300.1	Wheat	plastid	32.81	31.17
OQU86087	Sorghum	nucleus	35.94	30.98
TraesCS3A01G150300.2	Wheat	plastid	34.77	30.17
TraesCS3D01G158200.1	Wheat	plastid	34.77	30.17
HORVU3Hr1G030600.8	Barley	mitochondrion	34.96	26.02
Zm00001d039321_P008	Maize	nucleus	31.64	24.77
KRH21455	Soybean	vacuole	21.29	20.76
Os01t0225100-01	Rice	nucleus	10.55	19.15

Protein Annotations

EntrezGene:100791618	Gene3D:3.30.1370.110	MapMan:35.1	EMBL:ACUP02006953	ncoils:Coil	InterPro:DUF1771
EnsemblPlantsGene:GLYMA_11G175400	UniProt:I1LLK1	InterPro:IPR002625	EnsemblPlants:KRH30312	ProteinID:KRH30312	ProteinID:KRH30312.1
PFAM:PF01713	PFAM:PF08590	PFscan:PS50828	PANTHER:PTHR13308	PANTHER:PTHR13308:SF22	SMART:SM00463
SMART:SM01162	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	UniParc:UPI000233C9B8	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:19254052..19259364

Molecular Weight (calculated)

57238.0 Da

IEP (calculated)

8.795

GRAVY (calculated)

-0.720

Length

512 amino acids

Sequence
(BLAST)

001: MKNPRKKKRP KPQKKLEKNK GVVAAAAVVA ENENENEEEK RKRSILEALV EAFSLSSVRE ASMAYNIAGG DPDRASEILR KGFSDRSEDS FSCFSYGSSS
101: SSSSSSGLEL GSKGGWRQQQ QQKKMVASTG TVSTVLGKEY VRRNNNNIRN KGLSSNGVFE MEEAEQFLCS MLGDDSDINL AVVRDVLCQC GNDIERASDI
201: LLDLAASTNE KPNTARHPNY GVDNIDDERF FADPNDSLID RRLECTSLSW EGYLSNNPWS VGSFGRKYAE VLNNSKANSA VSPGCTKSEI PQKVLESLFN
301: IPKSTEHDKN TMNWRNVVKK IQSLGPGFYV SPHVAESQQR TCAKGDEYHV FREDSRKQWD SVKSYYTKAA TAYTKRERAY AAYLSDQGKE QTKLAQKADT
401: KASHDIFVAR NKGIENVITI DLHGQHVKQA MRMLKLHLLF GSYVPSVQTL RVITGCGSHG VGKSKLKQSV INLLDREAIE WREENRGTVL IKLSRWREYS
501: FLDTSSDSDS ND

Best Arabidopsis Sequence Match ( AT5G58720.1 )
(BLAST)

001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE

Arabidopsis Description

PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.