CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90296
KRG96151
KRG97204
KRH06447
KRH12155
KRH15737
KRH25284
KRH30384
KRH33541
KRH37161
KRH47890
KRH53733
KRH64202
KRH67862
KRH68927

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	KRH12155	AT1G30860.1	21798944
AT2G30580.1	KRH37161	AT1G30860.1	21798944
AT2G30580.1	KRH53733	AT2G40620.1	21798944
AT2G30580.1	KRH64202	AT2G40620.1	21798944
AT2G30580.1	KRG97204	AT2G46550.1	21798944
AT2G30580.1	KRH06447	AT2G46550.1	21798944
AT2G30580.1	KRH47890	AT2G46550.1	21798944
AT2G30580.1	KRH68927	AT2G46550.1	21798944
AT2G30580.1	KRG96151	AT3G09980.1	21798944
AT2G30580.1	KRH67862	AT3G09980.1	21798944
AT2G30580.1	KRG90296	AT4G13540.1	21798944
AT2G30580.1	KRH15737	AT4G13540.1	21798944
AT2G30580.1	KRH33541	AT4G13540.1	21798944
AT2G30580.1	KRH25284	AT5G22310.1	21798944
AT2G30580.1	KRH30384	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95629	Soybean	nucleus	90.56	94.16
VIT_07s0141g00610.t01	Wine grape	nucleus	64.72	66.98
KRH32110	Soybean	nucleus	61.57	63.87
KRH71326	Soybean	mitochondrion, nucleus	60.45	62.41
PGSC0003DMT400038984	Potato	nucleus	60.22	62.33
Solyc09g065990.2.1	Tomato	nucleus	59.78	61.86
Bra022807.1-P	Field mustard	cytosol	9.66	61.43
Solyc06g084040.2.1	Tomato	nucleus	56.4	58.24
Solyc06g008600.2.1	Tomato	nucleus	54.61	58.13
CDY47131	Canola	nucleus	53.03	56.59
AT2G30580.1	Thale cress	nucleus	53.26	56.43
PGSC0003DMT400051660	Potato	nucleus	56.63	55.75
CDY10748	Canola	nucleus	52.13	55.11
AT1G06770.1	Thale cress	nucleus	51.24	54.16
Bra018304.1-P	Field mustard	nucleus	51.69	53.24
CDX97807	Canola	nucleus	49.21	52.64
PGSC0003DMT400013629	Potato	nucleus	34.61	52.56
CDY29659	Canola	nucleus	48.99	51.78
KRG92687	Soybean	nucleus	48.99	50.35
KRH34095	Soybean	nucleus	48.54	50.0
Bra021651.1-P	Field mustard	nucleus	39.1	49.43
CDY23989	Canola	nucleus	47.42	49.18
GSMUA_Achr9P10710_001	Banana	nucleus	43.82	48.99
Os03t0741700-00	Rice	cytosol	20.67	47.92
GSMUA_Achr4P17750_001	Banana	nucleus	37.98	43.44
GSMUA_Achr5P03230_001	Banana	nucleus	42.92	43.41
Os12t0600200-03	Rice	cytosol, nucleus	31.69	40.99
CDY06664	Canola	nucleus	34.61	40.21
Bra015526.1-P	Field mustard	nucleus	21.35	38.78
TraesCS5A01G378600.1	Wheat	nucleus	44.04	38.58
KXG37982	Sorghum	nucleus	44.27	38.18
TraesCS5D01G388500.1	Wheat	nucleus	44.27	37.88
HORVU5Hr1G093720.3	Barley	nucleus	44.04	37.62
Zm00001d033322_P001	Maize	nucleus	44.27	37.45
TraesCS5B01G382100.1	Wheat	nucleus	43.37	37.4
Zm00001d041405_P001	Maize	nucleus	40.67	37.24
TraesCS5D01G069800.1	Wheat	nucleus	39.33	37.08
Zm00001d030985_P001	Maize	nucleus	39.55	36.97
TraesCS5A01G058000.1	Wheat	nucleus	39.1	36.86
TraesCS5B01G065600.1	Wheat	cytosol	38.65	36.44
HORVU5Hr1G014430.6	Barley	nucleus	38.65	36.29
TraesCS5A01G381800.1	Wheat	mitochondrion	29.89	35.47
TraesCS5D01G391100.1	Wheat	mitochondrion	29.89	35.47
Bra015525.1-P	Field mustard	cytosol	32.36	34.37
Os03t0632800-01	Rice	nucleus	33.26	34.26
TraesCS5B01G385300.1	Wheat	mitochondrion	30.11	33.5
Zm00001d013303_P001	Maize	nucleus	28.99	33.16
KRG92425	Soybean	nucleus	31.46	32.86
KRH34379	Soybean	nucleus	32.13	32.8
OQU79520	Sorghum	nucleus	40.0	32.25
HORVU5Hr1G094160.2	Barley	plastid	31.91	32.05
KXG37592	Sorghum	mitochondrion, nucleus	34.38	31.35
Zm00001d033967_P001	Maize	nucleus	26.52	30.89

Protein Annotations

EMBL:ACUP02002051	EnsemblPlants:KRH67309	EnsemblPlantsGene:GLYMA_03G159500	EntrezGene:100815540	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42
PFAM:PF13923	PFscan:PS50089	ProteinID:KRH67309	ProteinID:KRH67309.1	ScanProsite:PS00518	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002336D51	UniProt:I1JP01	MapMan:12.3.5.1.1.1	:

Description

hypothetical protein

Coordinates

chr3:+:37465953..37471404

Molecular Weight (calculated)

49329.0 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.589

Length

445 amino acids

Sequence
(BLAST)

001: MQQQGVSASE EGRRSSMSNQ VVKVRRNTIV ACMTCPLCNK LFREATTISE CLHTFCRKCI YDKITDEEIE CCPICNIDLG CVPLEKLRPD HSLQDVRAKV
101: FPLKGRKVKA PEVVTSVPLP ARRKERSLSS LVVSTPRVST QAAMTGRRTK PTRKASGLRS TSFSIEKPIK KEEDLLEDRP DSSSSPDTSY KFAQNSGQSI
201: SPCEGSQSIP NKGSENGAEP WDAKLDLWKP LNFLVEVASR SKSFKSNNVQ GSDAKLETNQ VNESDSQVQK TKNKENKRKA KIEDEKSSPY PVSSDTAKPN
301: KLRRIRKKKE TASGESGISP QAVLDSASNR LSRTGPIWFS LVASENQEGD APLPQIPASY LRIKDGSISV SFIQKYLMKK LDLTSETEVE IKCMGQPVLP
401: TLQLYNLVEL WLDMASTPQR IPATIGSSAK DFVMVLAYGR KVPHT

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.