CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99396
EES01602
EES06901
EES11990
EES12098
EES13800
KXG21735
KXG30263
KXG35486

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	KXG21735	AT5G05410.1	18552202
AT2G30580.1	EER99396	AT1G30860.1	21798944
AT2G30580.1	EES13800	AT2G46550.1	21798944
AT2G30580.1	KXG35486	AT2G46550.1	21798944
AT2G30580.1	EES06901	AT3G09980.1	21798944
AT2G30580.1	EES12098	AT3G09980.1	21798944
AT2G30580.1	KXG21735	AT5G05410.1	18552202
AT2G30580.1	EES11990	AT5G22310.1	21798944
AT2G30580.1	KXG30263	AT5G22310.1	21798944
AT3G23060.1	EES01602	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013303_P001	Maize	nucleus	50.82	63.75
Os03t0741700-00	Rice	cytosol	23.98	60.94
TraesCS5D01G391100.1	Wheat	mitochondrion	35.25	45.87
TraesCS5A01G381800.1	Wheat	mitochondrion	35.04	45.6
Bra022807.1-P	Field mustard	cytosol	6.35	44.29
TraesCS5B01G385300.1	Wheat	mitochondrion	35.45	43.25
KRG95629	Soybean	nucleus	31.56	35.98
AT2G30580.1	Thale cress	nucleus	30.94	35.95
HORVU5Hr1G094160.2	Barley	plastid	32.38	35.67
VIT_07s0141g00610.t01	Wine grape	nucleus	31.35	35.58
VIT_14s0081g00070.t01	Wine grape	nucleus	32.58	35.41
CDY10748	Canola	nucleus	30.33	35.15
PGSC0003DMT400038984	Potato	nucleus	30.94	35.12
Solyc09g065990.2.1	Tomato	nucleus	30.94	35.12
CDX97807	Canola	nucleus	29.71	34.86
CDY47131	Canola	nucleus	29.71	34.77
CDY29659	Canola	nucleus	29.71	34.44
KRH67309	Soybean	nucleus	31.35	34.38
Bra018304.1-P	Field mustard	nucleus	30.12	34.03
KRH34095	Soybean	nucleus	29.92	33.8
KRG92687	Soybean	nucleus	29.92	33.72
Solyc06g084040.2.1	Tomato	nucleus	29.71	33.64
Solyc06g008600.2.1	Tomato	nucleus	28.69	33.49
KRH71326	Soybean	mitochondrion, nucleus	29.51	33.41
KRH32110	Soybean	nucleus	28.89	32.87
CDY23989	Canola	nucleus	28.48	32.4
PGSC0003DMT400051660	Potato	nucleus	29.3	31.64
AT1G06770.1	Thale cress	nucleus	26.84	31.12
KXG37357	Sorghum	nucleus	23.77	29.9
Bra021651.1-P	Field mustard	nucleus	21.11	29.26
KXG37982	Sorghum	nucleus	30.53	28.88
VIT_05s0020g04730.t01	Wine grape	nucleus	27.66	28.48
CDY61240	Canola	nucleus	9.84	26.67
Bra015526.1-P	Field mustard	nucleus	13.11	26.12
OQU79520	Sorghum	nucleus	29.3	25.91
KRH34379	Soybean	nucleus	22.95	25.69
PGSC0003DMT400013629	Potato	nucleus	15.37	25.6
CDY06664	Canola	nucleus	19.67	25.07
KRG92425	Soybean	nucleus	21.72	24.88
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	7.17	23.33
PGSC0003DMT400087291	Potato	nucleus	14.55	22.83
Bra015525.1-P	Field mustard	cytosol	19.06	22.2
CDX94870	Canola	nucleus	19.88	21.6
Solyc09g083300.1.1	Tomato	nucleus, plastid	11.27	20.6
PGSC0003DMT400087288	Potato	plastid	6.97	20.48
AT3G23060.1	Thale cress	nucleus	20.08	20.42
Bra001901.1-P	Field mustard	nucleus	19.26	20.3
CDX92974	Canola	cytosol	18.65	19.65
PGSC0003DMT400010761	Potato	nucleus	18.24	18.02
PGSC0003DMT400015657	Potato	nucleus, plastid	13.93	17.22
Solyc09g083310.1.1	Tomato	nucleus	13.32	16.25
KXG34542	Sorghum	nucleus, plastid	14.14	12.92

Protein Annotations

EnsemblPlants:KXG37592	EnsemblPlantsGene:SORBI_3001G095200	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF70	PFAM:PF13923	PFscan:PS50089
ProteinID:KXG37592	ProteinID:KXG37592.1	ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00081AD111	UniProt:A0A1B6QI43	MapMan:12.3.5.1.1.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:7320025..7325475

Molecular Weight (calculated)

54283.8 Da

IEP (calculated)

10.127

GRAVY (calculated)

-0.824

Length

488 amino acids

Sequence
(BLAST)

001: MGTARGLARV RREALAACMT CPLCRGLLRA ATAITLCLHT FCRECIMEKI NDEEVDCCPV CDIDLGCDPE EKLRPDHNLQ DIRNKVFPIK KINVDAPKAV
101: TILPAKRKQR SLSSLVVDTP SVVKRTSLTG KRTKAKRRAA SSRATSPVNN GTMKLPIKSE NRDQKTEKSS ASQSTKVVTT ANKTENQDQK KTRKTLAKQS
201: TRAATPANKK QRNTDVEVSS KASSENRKNG KTVDKDELRK SSKVPRSTPK IYAVNEQQIK EKESELPTRK GEADNKVPRS TPKIHAVNEE QIKEKDELPT
301: RKGEADNKVV IPGTSVREHS NNSNLKEKND RSPRESSPLK DKTTTQDDSY QGLLGSASDL HDPITTPVWF SLISLPNQKE DPQLPQLSKT YMRIKDGGLQ
401: ISSVQRYIMK KLDLANENEV EIICHGEPIC PSSTLHGLME LWHRRQPTEP VEALVGTPAN EFVMVLGYRR RQHPNSVPST VAVPPGPS

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.