CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034468_P001	Maize	nucleus	87.37	87.6
Os03t0798200-01	Rice	nucleus	60.57	61.04
TraesCS5D01G450400.1	Wheat	nucleus	60.57	58.9
TraesCS5A01G443000.1	Wheat	nucleus	59.79	57.57
TraesCS5B01G447600.1	Wheat	nucleus	56.96	56.52
HORVU5Hr1G106470.4	Barley	nucleus	59.54	54.48
GSMUA_Achr8P18360_001	Banana	cytosol	10.31	46.51
KXG37982	Sorghum	nucleus	40.21	30.23
GSMUA_Achr8P18370_001	Banana	mitochondrion, nucleus	22.94	26.81
OQU79520	Sorghum	nucleus	34.54	24.28
KXG37592	Sorghum	mitochondrion, nucleus	29.9	23.77
KXG34542	Sorghum	nucleus, plastid	18.04	13.11

Protein Annotations

MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	UniProt:A0A1B6QHH5	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KXG37357	ProteinID:KXG37357	ProteinID:KXG37357.1	PFAM:PF00097
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR10825	PANTHER:PTHR10825:SF70	SMART:SM00184	EnsemblPlantsGene:SORBI_3001G055900
SUPFAM:SSF57850	UniParc:UPI0003C73678	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:4188388..4193250

Molecular Weight (calculated)

42758.3 Da

IEP (calculated)

10.474

GRAVY (calculated)

-0.435

Length

388 amino acids

Sequence
(BLAST)

001: MESTVLACEA PAGGAAAAPG AGGGDGGAGD VVMLRRSSLA ACLTCPLCGR LFRDAATITE CLHTFCRKCI SEEFINKEVC CCPICSIHLG CAPLEKLRID
101: HSLQYVRSKV FPFKKQKVED PEVTSPITSP IKTKERSLSS LTKHAPQMSM QKCLTKRRTK ASCLRKLPLH STLRGSSNIT KKSGGWRPLG CHFRAAKNKK
201: SLRSKSEDVK TAEKKTGDPG DITLASQAKT KKQFTRRGNL EKRTGTKKLL ILKEKQKNTK PKDIPNKRRL QALWFYLLAA FDQKGQPPLP QIPSKFLRIK
301: DVNLPASFIQ KYLVQKLNLS SEAEVEILCG GKPVSPGITL HDLADYWIDK RPKGRVRSSV GTPAAEFVLK VFYARSGVPL PETENNKD

Best Arabidopsis Sequence Match ( AT1G06770.1 )
(BLAST)

001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.