Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G450400.1 | Wheat | nucleus | 86.7 | 84.96 |
| TraesCS5A01G443000.1 | Wheat | nucleus | 84.14 | 81.64 |
| HORVU5Hr1G106470.4 | Barley | nucleus | 79.03 | 72.88 |
| Os03t0798200-01 | Rice | nucleus | 59.59 | 60.52 |
| KXG37357 | Sorghum | nucleus | 56.52 | 56.96 |
| Zm00001d034468_P001 | Maize | nucleus | 54.73 | 55.3 |
| GSMUA_Achr8P18360_001 | Banana | cytosol | 10.23 | 46.51 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 39.9 | 30.23 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 35.04 | 29.03 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 29.67 | 29.0 |
| GSMUA_Achr8P18370_001 | Banana | mitochondrion, nucleus | 21.23 | 25.0 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G447600.1 | EnsemblPlantsGene:TraesCS5B01G447600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | PFAM:PF13923 | PFscan:PS50089 |
| ScanProsite:PS00518 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | MapMan:12.3.5.1.1.1 | : |
Description
No Description!
Coordinates
chr5B:+:618470293..618474007
Molecular Weight (calculated)
42942.4 Da
IEP (calculated)
10.357
GRAVY (calculated)
-0.459
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNAVLACPA PSGGDGGGGG AGAGVVMVKR AALVACLTCP LCRRLLRDAA TITECLHTFC RKCISKEFID KEICYCPTCN IDLGCAPEEK LRVDHSLQYV
101: RSKIFPSKRR KVVDQEAISP VESPVKRKER SLSSLTVHGP RVSIQKCLTK RRTKASCLRS LSLGSKDATK KVGGWKPLAS HIRVGKSKKS IKSGSEEDNR
201: TGIKSDDPEH GAPSNEAKAS LLKRLLESKE HPTKKENLVK KTGSKKVFTL KGKKEIFKAK QPRKKRRLQA LWFYLVAAFD QKGQPPLPQL PTKFLRIKDV
301: ELPASFIQKY LVQKLNLSSE AEVELMCAGK KVDPAITLHD ITDCYLDKGP NGWVRSSVGS PATGFITTVF YSRPELPTPP TPPPPPESHH G
101: RSKIFPSKRR KVVDQEAISP VESPVKRKER SLSSLTVHGP RVSIQKCLTK RRTKASCLRS LSLGSKDATK KVGGWKPLAS HIRVGKSKKS IKSGSEEDNR
201: TGIKSDDPEH GAPSNEAKAS LLKRLLESKE HPTKKENLVK KTGSKKVFTL KGKKEIFKAK QPRKKRRLQA LWFYLVAAFD QKGQPPLPQL PTKFLRIKDV
301: ELPASFIQKY LVQKLNLSSE AEVELMCAGK KVDPAITLHD ITDCYLDKGP NGWVRSSVGS PATGFITTVF YSRPELPTPP TPPPPPESHH G
001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M
Arabidopsis Description
DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.