Factsheet for HORVU5Hr1G106470.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G450400.1	Wheat	nucleus	74.76	79.45
TraesCS5B01G447600.1	Wheat	nucleus	72.88	79.03
TraesCS5A01G443000.1	Wheat	nucleus	71.23	74.94
Os03t0798200-01	Rice	nucleus	54.25	59.74
KXG37357	Sorghum	nucleus	54.48	59.54
Zm00001d034468_P001	Maize	nucleus	51.42	56.33
GSMUA_Achr8P18360_001	Banana	cytosol	9.2	45.35
HORVU5Hr1G014430.6	Barley	nucleus	34.91	31.22
HORVU5Hr1G093720.3	Barley	nucleus	37.26	30.33
HORVU5Hr1G094160.2	Barley	plastid	29.48	28.22
GSMUA_Achr8P18370_001	Banana	mitochondrion, nucleus	18.63	23.8

Protein Annotations

EnsemblPlants:HORVU5Hr1G106470.4	EnsemblPlantsGene:HORVU5Hr1G106470	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF70	PFAM:PF13923	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B488BB5	UniProt:A0A287SM86
MapMan:12.3.5.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:624171260..624175591

Molecular Weight (calculated)

46418.4 Da

IEP (calculated)

10.446

GRAVY (calculated)

-0.466

Length

424 amino acids

Sequence
(BLAST)

001: SRFSSCSRPV RGGGRGGASC EEKPSPAGMQ DAVLACPAPS DGGAGGGDGE VGSAGPGVVM VKRAALVERL TCPLCRRLLR DAATITECLH TFCRKCISKE
101: FIDKEICYCP TCNIDLGCAP EEKLRVDHSL QYVRSKIFPS KRRKVVDQEA ISPFASPAKR KERSLSSLTV HGPRVSIQKC LTKRRTKASC LRSLSLGSKD
201: ATKKVGGWKP LASHIRVGKN KKSLKSGSEE DNRTGIKSGD PEHGAPSNEA KASLLNRFLE SKEYLTRKEN LVKKTGSKKV FTLKGKKKIF KAKQPRKKRR
301: LQALWFYLVA AFDQKGQPPL PQLPTKFLRI KDVELPASFI QKYLVQKLNL SSEAEVELMC VGKKVDPAIT LHDIMECYLD KGPNGWVRSS VGSPATGFIT
401: TVFYSRPELP TPTTTTTTTT TTTT

Best Arabidopsis Sequence Match ( AT1G06770.1 )
(BLAST)

001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.