Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G447600.1 | Wheat | nucleus | 81.64 | 84.14 |
| TraesCS5D01G450400.1 | Wheat | nucleus | 82.13 | 82.96 |
| HORVU5Hr1G106470.4 | Barley | nucleus | 74.94 | 71.23 |
| Os03t0798200-01 | Rice | nucleus | 57.57 | 60.26 |
| KXG37357 | Sorghum | nucleus | 57.57 | 59.79 |
| Zm00001d034468_P001 | Maize | nucleus | 54.84 | 57.11 |
| GSMUA_Achr8P18360_001 | Banana | cytosol | 10.17 | 47.67 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 36.23 | 30.93 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 37.97 | 30.12 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 27.05 | 29.07 |
| GSMUA_Achr8P18370_001 | Banana | mitochondrion, nucleus | 21.34 | 25.9 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G443000.1 | EnsemblPlantsGene:TraesCS5A01G443000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | PFAM:PF13923 | PFscan:PS50089 |
| ScanProsite:PS00518 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | MapMan:12.3.5.1.1.1 | : |
Description
No Description!
Coordinates
chr5A:+:623207544..623213464
Molecular Weight (calculated)
44278.1 Da
IEP (calculated)
10.472
GRAVY (calculated)
-0.443
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNAVLACPA PSGGGAGGDG GVGGAGVVMV KRAALVACLT CPLCRRLLRD AATITECLHT FCRKCISKEF IDKEICYCPT CNIDLGCAPE EKLRVDHSLQ
101: YVRSKIFPSK RRKVVDQEAI SPVESPVKRK ERSLSSLSVH GPRVSIQKCL TKRRTKASCL RSLSLYSTLQ GNKDATKKVG GWKPLASHIR VGKSKKSLKS
201: GSEEDNRTGI KSDDPEHGAP SNEAKASLLK RLLESKEHLA KKENLVKKTG SKKVFTLKGK KKIFKAKQPR KKRRLRALWF YLVAAFDQKG QPPLPQLPTK
301: FLRIKDVELP ASFIQKYLVQ KLNLSSEAEV ELMCAGKKVD PAITLHDITD CYLDKGPNGW VRSSVGSPAT GFITTVFYSR PELPTPPTPP PRPESHHGAP
401: PHV
101: YVRSKIFPSK RRKVVDQEAI SPVESPVKRK ERSLSSLSVH GPRVSIQKCL TKRRTKASCL RSLSLYSTLQ GNKDATKKVG GWKPLASHIR VGKSKKSLKS
201: GSEEDNRTGI KSDDPEHGAP SNEAKASLLK RLLESKEHLA KKENLVKKTG SKKVFTLKGK KKIFKAKQPR KKRRLRALWF YLVAAFDQKG QPPLPQLPTK
301: FLRIKDVELP ASFIQKYLVQ KLNLSSEAEV ELMCAGKKVD PAITLHDITD CYLDKGPNGW VRSSVGSPAT GFITTVFYSR PELPTPPTPP PRPESHHGAP
401: PHV
001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M
Arabidopsis Description
DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.