Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G06770.1 | Thale cress | nucleus | 26.88 | 30.64 |
| AT2G30580.1 | Thale cress | nucleus | 26.25 | 30.0 |
| CDX94870 | Canola | nucleus | 27.71 | 29.62 |
| CDX92974 | Canola | cytosol | 27.29 | 28.29 |
| Bra001901.1-P | Field mustard | nucleus | 26.88 | 27.86 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 22.5 | 27.14 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 20.42 | 26.13 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 20.21 | 25.87 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 20.62 | 24.75 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 19.38 | 23.91 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 21.88 | 23.86 |
| Os03t0741700-00 | Rice | cytosol | 9.38 | 23.44 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 21.25 | 21.61 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 21.04 | 21.4 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 22.5 | 21.26 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 22.71 | 20.96 |
| KXG37982 | Sorghum | nucleus | 22.5 | 20.93 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 15.0 | 20.93 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 20.42 | 20.76 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 22.29 | 20.74 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 22.5 | 20.73 |
| Zm00001d030985_P001 | Maize | nucleus | 20.42 | 20.59 |
| HORVU5Hr1G094160.2 | Barley | plastid | 18.96 | 20.54 |
| Zm00001d033322_P001 | Maize | nucleus | 22.5 | 20.53 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 20.21 | 20.46 |
| Zm00001d041405_P001 | Maize | nucleus | 20.42 | 20.16 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 20.42 | 20.08 |
| Zm00001d013303_P001 | Maize | nucleus | 15.42 | 19.02 |
| Os03t0632800-01 | Rice | nucleus | 15.62 | 17.36 |
| OQU79520 | Sorghum | nucleus | 19.79 | 17.21 |
| Zm00001d033967_P001 | Maize | nucleus | 12.92 | 16.23 |
Protein Annotations
| MapMan:12.3.5.1.1.1 | Gene3D:3.30.40.10 | EntrezGene:821880 | UniProt:A0A178VJ20 | ProteinID:AEE76711.1 | ArrayExpress:AT3G23060 |
| EnsemblPlantsGene:AT3G23060 | RefSeq:AT3G23060 | TAIR:AT3G23060 | RefSeq:AT3G23060-TAIR-G | EnsemblPlants:AT3G23060.1 | TAIR:AT3G23060.1 |
| EMBL:AY099845 | Unigene:At.37773 | ProteinID:BAB02097.1 | EMBL:BT006623 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_188946.2 |
| ProteinID:OAP05744.1 | PFAM:PF13923 | PO:PO:0007616 | PO:PO:0009046 | PO:PO:0020090 | ScanProsite:PS00518 |
| PFscan:PS50089 | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | UniProt:Q9LS86 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00000A800E | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
Probable E3 ubiquitin protein ligase DRIPH [Source:UniProtKB/Swiss-Prot;Acc:Q9LS86]
Coordinates
chr3:+:8200636..8203335
Molecular Weight (calculated)
53667.2 Da
IEP (calculated)
8.416
GRAVY (calculated)
-0.581
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTKVLSKEV KPCLACPICT NPFKDATTIS ECLHTFCRSC IRNKFINERV NACPVCNVNL GVFPLEKLRS DCTWQDLKLK IYRAMMESLK KAGPKTVAAS
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.