Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23060.1 | CDY26370 | AT5G45490.1 | 21798944 |
| AT3G23060.1 | CDY65474 | AT5G45490.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001901.1-P | Field mustard | nucleus | 89.42 | 89.42 |
| CDX94870 | Canola | nucleus | 65.87 | 67.93 |
| AT3G23060.1 | Thale cress | nucleus | 28.29 | 27.29 |
| CDX97807 | Canola | nucleus | 23.97 | 26.68 |
| CDY47131 | Canola | nucleus | 23.97 | 26.62 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 22.68 | 26.38 |
| CDY10748 | Canola | nucleus | 23.97 | 26.37 |
| CDY29659 | Canola | nucleus | 23.97 | 26.37 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 25.05 | 26.36 |
| Os03t0741700-00 | Rice | cytosol | 10.8 | 26.04 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 20.09 | 23.91 |
| CDY23989 | Canola | nucleus | 22.03 | 23.78 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 18.36 | 22.67 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 18.36 | 22.67 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 22.25 | 21.82 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 22.03 | 21.61 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 18.57 | 21.5 |
| Zm00001d030985_P001 | Maize | nucleus | 22.03 | 21.43 |
| CDY06664 | Canola | nucleus | 17.71 | 21.41 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 21.81 | 21.4 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 15.77 | 21.22 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 23.54 | 21.12 |
| CDY61240 | Canola | nucleus | 8.21 | 21.11 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 21.38 | 20.89 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 23.11 | 20.54 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 22.46 | 20.47 |
| Zm00001d041405_P001 | Maize | nucleus | 20.95 | 19.96 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 22.25 | 19.81 |
| KXG37982 | Sorghum | nucleus | 22.03 | 19.77 |
| HORVU5Hr1G094160.2 | Barley | plastid | 18.79 | 19.64 |
| Zm00001d033322_P001 | Maize | nucleus | 21.81 | 19.2 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 19.65 | 18.65 |
| Zm00001d013303_P001 | Maize | nucleus | 15.33 | 18.25 |
| OQU79520 | Sorghum | nucleus | 21.6 | 18.12 |
| Os03t0632800-01 | Rice | nucleus | 16.41 | 17.59 |
| Zm00001d033967_P001 | Maize | nucleus | 14.25 | 17.28 |
Protein Annotations
| EnsemblPlants:CDX92974 | EnsemblPlantsGene:GSBRNA2T00154854001 | Gene3D:3.30.40.10 | GO:A0A078DX09 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF42 | PFscan:PS50089 | ProteinID:CDX92974 |
| ProteinID:CDX92974.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EE58CC | MapMan:12.3.5.1.1.1 | : |
Description
BnaA03g36960D
Coordinates
chrLK031874:+:411016..414003
Molecular Weight (calculated)
50987.6 Da
IEP (calculated)
8.142
GRAVY (calculated)
-0.502
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMEKKMTVL KAKRQDMKAC FSCPICNNLY DRATTISECL HTYIKNLFFY LYLGNTVCKR CIEDKLVVEN LKACPVCNVD LGVAPLDKLR SDNMWDELRL
101: KVFKQKPKSV KVAAATIETA SASLTYSRKK KTVTSPRAST SPEPTPDGAL ESEKLEEEME AVSLNQTSCA LVSNFRRRVR KNLAPKRNEN PLEPQQLHVE
201: SDNGFEIVLN FEQDNGLAGA LTSNGCIQKV PVSSDDLGKS LSNSKESNGT ALNVETVITT NGNTEEVTGE ANENNVLVSS ENVPKEVSGE KPKSNGVEKQ
301: ENVSTISAGK KGKGKAYAQR VLRPRKQGNM SSDGASEAAV SKEAEDKVEG SNKKVWLSLI AAANQNTERP LLPQISNAYI RTDGNLTVSY VKKYLANKLG
401: LQSEDQVEIW LRQEPVCSTQ KLHNLVDWWV QSTPVAERKS AMVGSSGAEF VMVLHYSGSH LCE
101: KVFKQKPKSV KVAAATIETA SASLTYSRKK KTVTSPRAST SPEPTPDGAL ESEKLEEEME AVSLNQTSCA LVSNFRRRVR KNLAPKRNEN PLEPQQLHVE
201: SDNGFEIVLN FEQDNGLAGA LTSNGCIQKV PVSSDDLGKS LSNSKESNGT ALNVETVITT NGNTEEVTGE ANENNVLVSS ENVPKEVSGE KPKSNGVEKQ
301: ENVSTISAGK KGKGKAYAQR VLRPRKQGNM SSDGASEAAV SKEAEDKVEG SNKKVWLSLI AAANQNTERP LLPQISNAYI RTDGNLTVSY VKKYLANKLG
401: LQSEDQVEIW LRQEPVCSTQ KLHNLVDWWV QSTPVAERKS AMVGSSGAEF VMVLHYSGSH LCE
001: MLTKVLSKEV KPCLACPICT NPFKDATTIS ECLHTFCRSC IRNKFINERV NACPVCNVNL GVFPLEKLRS DCTWQDLKLK IYRAMMESLK KAGPKTVAAS
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
Arabidopsis Description
Probable E3 ubiquitin protein ligase DRIPH [Source:UniProtKB/Swiss-Prot;Acc:Q9LS86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.