Factsheet for TraesCS5D01G388500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2
TraesCS2A01G229600.2
TraesCS2A01G282200.1
TraesCS2A01G292600.1
TraesCS2B01G251300.1
TraesCS2B01G299400.1
TraesCS2B01G309000.1
TraesCS2D01G233500.1
TraesCS2D01G281000.1
TraesCS2D01G290400.1
TraesCS3B01G358800.1
TraesCS3D01G322300.1
TraesCS5A01G194900.2
TraesCS5B01G190300.1
TraesCS5D01G198100.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G06770.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G06770.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT2G30580.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS2D01G233500.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS5A01G194900.2	AT2G46550.1	21798944
AT2G30580.1	TraesCS5B01G190300.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS5D01G198100.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS2A01G292600.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2B01G309000.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2D01G290400.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT2G30580.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7D01G134000.1	AT5G22310.1	21798944
AT3G23060.1	TraesCS3B01G358800.1	AT5G45490.1	21798944
AT3G23060.1	TraesCS3D01G322300.1	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G378600.1	Wheat	nucleus	78.08	79.92
HORVU5Hr1G093720.3	Barley	nucleus	77.88	77.74
TraesCS5B01G382100.1	Wheat	nucleus	76.35	76.94
Os03t0632800-01	Rice	nucleus	47.5	57.18
Zm00001d033322_P001	Maize	nucleus	55.38	54.75
KXG37982	Sorghum	nucleus	53.85	54.26
GSMUA_Achr9P10710_001	Banana	nucleus	38.27	50.0
VIT_07s0141g00610.t01	Wine grape	nucleus	40.19	48.6
GSMUA_Achr4P17750_001	Banana	nucleus	35.77	47.81
Solyc06g008600.2.1	Tomato	nucleus	38.08	47.37
TraesCS5D01G069800.1	Wheat	nucleus	42.12	46.4
Solyc09g065990.2.1	Tomato	nucleus	38.27	46.28
AT2G30580.1	Thale cress	nucleus	37.31	46.19
PGSC0003DMT400038984	Potato	nucleus	38.08	46.05
GSMUA_Achr5P03230_001	Banana	nucleus	38.85	45.91
Bra022807.1-P	Field mustard	cytosol	6.15	45.71
Solyc06g084040.2.1	Tomato	nucleus	37.69	45.48
CDX97807	Canola	nucleus	36.35	45.43
KRH34095	Soybean	nucleus	37.31	44.91
CDY29659	Canola	nucleus	36.35	44.89
KRG95629	Soybean	nucleus	36.92	44.86
CDY47131	Canola	nucleus	35.96	44.84
AT1G06770.1	Thale cress	nucleus	36.15	44.66
KRG92687	Soybean	nucleus	37.12	44.57
CDY10748	Canola	nucleus	35.96	44.42
VIT_14s0081g00070.t01	Wine grape	nucleus	38.27	44.32
KRH67309	Soybean	nucleus	37.88	44.27
Bra018304.1-P	Field mustard	nucleus	35.77	43.06
PGSC0003DMT400051660	Potato	nucleus	37.31	42.92
KRH32110	Soybean	nucleus	34.81	42.19
CDY23989	Canola	nucleus	34.42	41.72
Bra021651.1-P	Field mustard	nucleus	28.08	41.48
PGSC0003DMT400013629	Potato	nucleus	23.27	41.3
KRH71326	Soybean	mitochondrion, nucleus	33.46	40.37
TraesCS5D01G450400.1	Wheat	nucleus	30.19	39.35
VIT_05s0020g04730.t01	Wine grape	nucleus	35.0	38.4
Bra015526.1-P	Field mustard	nucleus	17.5	37.14
CDY06664	Canola	nucleus	26.15	35.51
TraesCS5D01G391100.1	Wheat	mitochondrion	24.81	34.4
Bra015525.1-P	Field mustard	cytosol	26.15	32.46
KRG92425	Soybean	nucleus	24.04	29.34
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.46	29.33
CDY61240	Canola	nucleus	10.0	28.89
PGSC0003DMT400087291	Potato	nucleus	16.73	27.97
KRH34379	Soybean	nucleus	22.88	27.29
PGSC0003DMT400010761	Potato	nucleus	23.46	24.7
PGSC0003DMT400015657	Potato	nucleus, plastid	18.08	23.8
Bra001901.1-P	Field mustard	nucleus	21.15	23.76
Solyc09g083310.1.1	Tomato	nucleus	18.08	23.5
CDX94870	Canola	nucleus	19.62	22.72
AT3G23060.1	Thale cress	nucleus	20.96	22.71
CDX92974	Canola	cytosol	19.81	22.25
Solyc09g083300.1.1	Tomato	nucleus, plastid	11.35	22.1
PGSC0003DMT400087288	Potato	plastid	6.92	21.69

Protein Annotations

EnsemblPlants:TraesCS5D01G388500.1	EnsemblPlantsGene:TraesCS5D01G388500	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	PFAM:PF13923	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16525	MapMan:12.3.5.1.1.1

Description

No Description!

Coordinates

chr5D:+:457992504..457997112

Molecular Weight (calculated)

57467.7 Da

IEP (calculated)

8.117

GRAVY (calculated)

-0.905

Length

520 amino acids

Sequence
(BLAST)

001: MQPHPDPASP ERQEGSPPPP PEPMPTEETQ AAPEPDAEEE VKDAPAVEVE PEEAVDRDDE EAKGREEEAK DGDEQEEAEE RRGRGRKRGR RPGAPRGLVM
101: VKRELLARCM TCPLCNRLLR DATTVSECLH TFCRKCIYKK FNDEEVESCP VCDIDLGCTP VEKLRADHSL QDVRSKIFPF KRKKIKAEDV ASPDSPPNKR
201: KERSISSLVV HTPRLTPTGS TGRRTKVVTR KAAAALHSLG PTIDSPVKKE NSDKSAHSSS FPANLGKVPK TKRQILSNAE EASNYSSNKD TEDDSKDMAD
301: NAELWRPLNC LVEAANRTKS FRSSLQGSGV KREQLNGSPS STNGIQTNPK EHPKRPKTED DKKDAPVSPV TLKRKLKGTG RRRSGLRAPA DGDPDGALTQ
401: NEKRFNCIWF SLVASLEQKG DSPLPQIPSH YLRIKDANIP ASSIQKYLVQ KLSLPSESEV EINCCGQPVN PTQPLRNLVE LWLRGRSAQA TPAIVGSPAE
501: EFVMVLNYGR PKPMEPLSAQ

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.