CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92687	Soybean	nucleus	94.68	94.46
VIT_14s0081g00070.t01	Wine grape	nucleus	57.41	55.23
KRG95629	Soybean	nucleus	50.69	51.17
GSMUA_Achr9P10710_001	Banana	nucleus	45.83	49.75
KRH67309	Soybean	nucleus	50.0	48.54
KRH32110	Soybean	nucleus	46.53	46.85
KRH71326	Soybean	mitochondrion, nucleus	46.3	46.4
Os03t0741700-00	Rice	cytosol	19.91	44.79
GSMUA_Achr5P03230_001	Banana	nucleus	45.37	44.55
GSMUA_Achr4P17750_001	Banana	nucleus	38.43	42.67
Os12t0600200-03	Rice	cytosol, nucleus	30.09	37.79
HORVU5Hr1G093720.3	Barley	nucleus	45.14	37.43
TraesCS5D01G388500.1	Wheat	nucleus	44.91	37.31
KXG37982	Sorghum	nucleus	44.44	37.21
TraesCS5A01G378600.1	Wheat	nucleus	43.52	37.01
TraesCS5B01G382100.1	Wheat	nucleus	43.52	36.43
Os03t0632800-01	Rice	nucleus	36.34	36.34
Zm00001d033322_P001	Maize	nucleus	44.21	36.31
Zm00001d030985_P001	Maize	nucleus	38.43	34.87
Zm00001d041405_P001	Maize	nucleus	38.89	34.57
HORVU5Hr1G014430.6	Barley	nucleus	37.73	34.39
TraesCS5D01G069800.1	Wheat	nucleus	37.5	34.32
TraesCS5A01G058000.1	Wheat	nucleus	37.27	34.11
TraesCS5B01G065600.1	Wheat	cytosol	36.81	33.69
TraesCS5D01G391100.1	Wheat	mitochondrion	27.55	31.73
KRG92425	Soybean	nucleus	31.25	31.69
KRH34379	Soybean	nucleus	31.71	31.42
TraesCS5A01G381800.1	Wheat	mitochondrion	27.08	31.2
TraesCS5B01G385300.1	Wheat	mitochondrion	28.24	30.5
Zm00001d013303_P001	Maize	nucleus	27.08	30.08
KXG37592	Sorghum	mitochondrion, nucleus	33.8	29.92
OQU79520	Sorghum	nucleus	38.19	29.89
Zm00001d033967_P001	Maize	nucleus	25.93	29.32
HORVU5Hr1G094160.2	Barley	plastid	29.17	28.44

Protein Annotations

EMBL:ACUP02006578	EnsemblPlants:KRH34095	EnsemblPlantsGene:GLYMA_10G162800	EntrezGene:100783999	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42
PFAM:PF13923	PFscan:PS50089	ProteinID:KRH34095	ProteinID:KRH34095.1	ScanProsite:PS00518	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00023CDD18	UniProt:I1LBM4	MapMan:12.3.5.1.1.1	:

Description

hypothetical protein

Coordinates

chr10:+:39698055..39703543

Molecular Weight (calculated)

47518.1 Da

IEP (calculated)

9.664

GRAVY (calculated)

-0.547

Length

432 amino acids

Sequence
(BLAST)

001: MVSSQLVKVK RDTLRPCMTC PLCHNFFKDA TTISTCLHTF CRKCIYEKLS DEETDCCPVC NIDLGCLPVE KLRPDHNLHD IRAKIFPFKR KKIKAQEVLS
101: SISLPAKRKE RSLSSLVVSA PKVSMQPGFT GKRTKNSTRK AAALRGCSFL LDESIKKEQA NGDDNMDSSM PEPSKKHKPH EDTENNVEHT EGKVDLWTPL
201: NCLVEAANRT KSSRSNSQAT PLAKLESPTT PHGGQDTSET TTKTDLPASA KSELNIPKSK NKDTGHKTIF GDDKDANSLP SGPGKRRRLR PAGQKRVAAS
301: EMSASSPAPL DTTGGKCNRK NSPIWFSLVA SEDQKGDVPL PQISACYLRI KDGAVPVSFI QKYLVKKLNL ACEAEVEIMC RGQPVLPSLQ LHNLVDLWFR
401: TASTSKKIPA SVGSSAKDFV MVLSYCRKAL PP

Best Arabidopsis Sequence Match ( AT1G06770.1 )
(BLAST)

001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.