Factsheet for Zm00001d041405_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d005653_P001
Zm00001d006417_P002
Zm00001d010048_P004
Zm00001d016683_P001
Zm00001d020233_P001
Zm00001d021532_P001
Zm00001d025208_P002
Zm00001d025338_P001
Zm00001d032283_P004
Zm00001d043199_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	Zm00001d010048_P004	AT5G05410.1	18552202
AT2G30580.1	Zm00001d006417_P002	AT1G30860.1	21798944
AT2G30580.1	Zm00001d021532_P001	AT1G30860.1	21798944
AT2G30580.1	Zm00001d005653_P001	AT2G46550.1	21798944
AT2G30580.1	Zm00001d020233_P001	AT2G46550.1	21798944
AT2G30580.1	Zm00001d032283_P004	AT2G46550.1	21798944
AT2G30580.1	Zm00001d016683_P001	AT3G09980.1	21798944
AT2G30580.1	Zm00001d025338_P001	AT3G09980.1	21798944
AT2G30580.1	Zm00001d010048_P004	AT5G05410.1	18552202
AT2G30580.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT2G30580.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT2G30580.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT3G23060.1	Zm00001d043199_P001	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030985_P001	Maize	nucleus	69.34	70.8
Os12t0600200-03	Rice	cytosol, nucleus	45.47	64.24
OQU79520	Sorghum	nucleus	68.31	60.14
TraesCS5D01G069800.1	Wheat	nucleus	55.35	56.99
TraesCS5A01G058000.1	Wheat	nucleus	55.35	56.99
TraesCS5B01G065600.1	Wheat	cytosol	54.12	55.72
HORVU5Hr1G014430.6	Barley	nucleus	54.32	55.7
GSMUA_Achr9P10710_001	Banana	nucleus	38.89	47.49
Zm00001d033322_P001	Maize	nucleus	50.0	46.2
PGSC0003DMT400038984	Potato	nucleus	38.89	43.95
Solyc09g065990.2.1	Tomato	nucleus	38.27	43.26
VIT_07s0141g00610.t01	Wine grape	nucleus	38.07	43.02
AT2G30580.1	Thale cress	nucleus	37.04	42.86
GSMUA_Achr4P17750_001	Banana	nucleus	33.54	41.9
AT1G06770.1	Thale cress	nucleus	36.21	41.81
GSMUA_Achr5P03230_001	Banana	nucleus	37.04	40.91
KRH67309	Soybean	nucleus	37.24	40.67
Solyc06g008600.2.1	Tomato	nucleus	34.98	40.67
KRG95629	Soybean	nucleus	35.8	40.65
CDX97807	Canola	nucleus	34.57	40.38
Solyc06g084040.2.1	Tomato	nucleus	35.8	40.37
CDY47131	Canola	nucleus	34.36	40.05
CDY29659	Canola	nucleus	34.57	39.91
CDY10748	Canola	nucleus	34.57	39.91
VIT_14s0081g00070.t01	Wine grape	nucleus	36.42	39.42
Bra018304.1-P	Field mustard	nucleus	34.98	39.35
KRG92687	Soybean	nucleus	34.98	39.26
KRH34095	Soybean	nucleus	34.57	38.89
PGSC0003DMT400051660	Potato	nucleus	35.6	38.27
KRH32110	Soybean	nucleus	33.74	38.23
KRH71326	Soybean	mitochondrion, nucleus	33.33	37.59
CDY23989	Canola	nucleus	32.51	36.83
Zm00001d034468_P001	Maize	nucleus	29.22	36.69
Bra021651.1-P	Field mustard	nucleus	25.93	35.8
Bra022807.1-P	Field mustard	cytosol	5.14	35.71
VIT_05s0020g04730.t01	Wine grape	nucleus	33.95	34.81
PGSC0003DMT400013629	Potato	nucleus	20.37	33.79
Bra015526.1-P	Field mustard	nucleus	16.26	32.24
Zm00001d013303_P001	Maize	nucleus	25.31	31.62
CDY06664	Canola	nucleus	24.07	30.55
CDY61240	Canola	nucleus	10.7	28.89
Zm00001d033967_P001	Maize	nucleus	22.63	28.8
Bra015525.1-P	Field mustard	cytosol	24.07	27.92
KRG92425	Soybean	nucleus	24.07	27.46
KRH34379	Soybean	nucleus	23.46	26.15
PGSC0003DMT400087291	Potato	nucleus	16.26	25.4
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	7.41	24.0
CDX94870	Canola	nucleus	21.6	23.39
Bra001901.1-P	Field mustard	nucleus	20.58	21.6
Solyc09g083300.1.1	Tomato	nucleus, plastid	11.73	21.35
CDX92974	Canola	cytosol	19.96	20.95
AT3G23060.1	Thale cress	nucleus	20.16	20.42
PGSC0003DMT400010761	Potato	nucleus	20.58	20.24
PGSC0003DMT400087288	Potato	plastid	6.38	18.67
Solyc09g083310.1.1	Tomato	nucleus	15.23	18.5
PGSC0003DMT400015657	Potato	nucleus, plastid	14.4	17.72
Zm00001d018972_P005	Maize	nucleus, plastid	17.28	16.57
Zm00001d031900_P001	Maize	cytosol	8.23	13.65

Protein Annotations

EntrezGene:100382051	MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	EMBL:BT063001	UniProt:C0P3Y2	GO:GO:0003674
GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM32932.1	PFAM:PF13923
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0001948FEB	EnsemblPlantsGene:Zm00001d041405	EnsemblPlants:Zm00001d041405_P001	EnsemblPlants:Zm00001d041405_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

E3 ubiquitin protein ligase DRIP2

Coordinates

chr3:-:117289104..117299908

Molecular Weight (calculated)

53433.8 Da

IEP (calculated)

9.890

GRAVY (calculated)

-0.670

Length

486 amino acids

Sequence
(BLAST)

001: MQTSETTGTA SPPAVEPEAE DKVEEGARAN EEAAAKVGGD DEDDWESEHE GRRGRRQRCR RGGAAGDSAV AMVKRELLTR CLTCPLCDHL LRQATTISEC
101: LHTFCRKCIY KKLNDEDLDH CPVCKIDLGC TPVEKLRADH NIQDVRSKFF PFKRKKVNAE EAESPIMLPV KVKERSISSL VVNTPRVTPA ALTGRRTRAV
201: TRKAAALRGL GPIIVDPLKK DNDNPNKQTD NSSLLDSLNK IPQTRRQLLS NGDTTSHLSV KDKAGDNKDL DKSEFWKPLN CLVEAASKTK PLTSAPRPAL
301: KGDKPRKSPS SDSEHSSRTK TREPLQKSKA EVDKSDPGPI VMLRKRGRPG RKRKNPLPET NADSTATAIQ ARKALSPIWF SLIASFDQKG VPPLPQIPAH
401: YLRIKDGSIP ASSIQKYIVQ KLSLLSESEV EISCCGQTVN PGQPVRNLVE RWLRVGPARP LHTVIGSSGG DYVMVISYGR PKSASC

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.