Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400087288 | Potato | plastid | 22.51 | 42.17 |
| Solyc09g083300.1.1 | Tomato | nucleus, plastid | 26.69 | 31.09 |
| PGSC0003DMT400015657 | Potato | nucleus, plastid | 34.41 | 27.09 |
| PGSC0003DMT400013629 | Potato | nucleus | 22.51 | 23.89 |
| PGSC0003DMT400038984 | Potato | nucleus | 31.19 | 22.56 |
| CDY61240 | Canola | nucleus | 12.86 | 22.22 |
| PGSC0003DMT400051660 | Potato | nucleus | 31.51 | 21.68 |
| PGSC0003DMT400010761 | Potato | nucleus | 33.76 | 21.26 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 23.15 | 20.93 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 26.69 | 20.85 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 26.69 | 18.86 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 27.33 | 18.01 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 27.01 | 17.8 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 28.62 | 17.52 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 26.37 | 17.37 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 28.62 | 17.25 |
| VIT_05s0020g04730.t01 | Wine grape | nucleus | 26.05 | 17.09 |
| KRH34379 | Soybean | nucleus | 23.47 | 16.74 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 27.97 | 16.73 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 25.4 | 16.67 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 27.65 | 16.51 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 19.61 | 16.27 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 19.61 | 16.27 |
| Zm00001d041405_P001 | Maize | nucleus | 25.4 | 16.26 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 20.26 | 16.2 |
| Zm00001d030985_P001 | Maize | nucleus | 24.44 | 15.97 |
| KRG92425 | Soybean | nucleus | 21.54 | 15.73 |
| KXG37982 | Sorghum | nucleus | 25.4 | 15.31 |
| Zm00001d033322_P001 | Maize | nucleus | 25.4 | 15.02 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 19.29 | 15.0 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 22.83 | 14.55 |
| HORVU5Hr1G094160.2 | Barley | plastid | 20.26 | 14.22 |
| OQU79520 | Sorghum | nucleus | 24.76 | 13.95 |
| Os03t0741700-00 | Rice | cytosol | 8.36 | 13.54 |
| Zm00001d013303_P001 | Maize | nucleus | 16.72 | 13.37 |
| Os03t0632800-01 | Rice | nucleus | 15.76 | 11.34 |
| Zm00001d033967_P001 | Maize | nucleus | 12.86 | 10.47 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400087291 | EnsemblPlantsGene:PGSC0003DMG400036862 | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | PGSC:PGSC0003DMG400036862 | SEG:seg |
| UniParc:UPI000296B8BE | UniProt:M1DDJ0 | MapMan:35.1 | : | : | : |
Description
Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400036862]
Coordinates
chr9:-:55366126..55367851
Molecular Weight (calculated)
34627.2 Da
IEP (calculated)
7.592
GRAVY (calculated)
-0.797
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSKIREFI EQGLIEKSKK SEPKKLARED IDLNKIPDML IDIPPSPPPP PPPVVATSSR RKEKSIYSIV NATPLVDNDD DEEEEEEEDE EYVPSDEEYV
101: PSPKVKEHKV CKQNIKRLDV IQATEAPSRS NNNIDKGKGK TGRCRRKKKE TNIPPPPPVS GSGDSGSGGT NTNVAQVQVT TETAGGTNND ITTVVNERVH
201: PIWFSLVACE KQEGHSPLPQ ISTRYIKIKD ANKPSSYIKK YLAHKLSLQS EDEVELRMLG MPIRPDLPIK DLEKLWLRVA PHSGKSSVKV GSSAEELVMV
301: LKYSRSHPKL N
101: PSPKVKEHKV CKQNIKRLDV IQATEAPSRS NNNIDKGKGK TGRCRRKKKE TNIPPPPPVS GSGDSGSGGT NTNVAQVQVT TETAGGTNND ITTVVNERVH
201: PIWFSLVACE KQEGHSPLPQ ISTRYIKIKD ANKPSSYIKK YLAHKLSLQS EDEVELRMLG MPIRPDLPIK DLEKLWLRVA PHSGKSSVKV GSSAEELVMV
301: LKYSRSHPKL N
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.