Factsheet for TraesCS5D01G391100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2
TraesCS2A01G229600.2
TraesCS2A01G282200.1
TraesCS2A01G292600.1
TraesCS2B01G251300.1
TraesCS2B01G299400.1
TraesCS2B01G309000.1
TraesCS2D01G233500.1
TraesCS2D01G281000.1
TraesCS2D01G290400.1
TraesCS3B01G358800.1
TraesCS3D01G322300.1
TraesCS5A01G194900.2
TraesCS5B01G190300.1
TraesCS5D01G198100.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G06770.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G06770.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT2G30580.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS2D01G233500.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS5A01G194900.2	AT2G46550.1	21798944
AT2G30580.1	TraesCS5B01G190300.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS5D01G198100.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS2A01G292600.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2B01G309000.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2D01G290400.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT2G30580.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7D01G134000.1	AT5G22310.1	21798944
AT3G23060.1	TraesCS3B01G358800.1	AT5G45490.1	21798944
AT3G23060.1	TraesCS3D01G322300.1	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G381800.1	Wheat	mitochondrion	96.8	96.8
TraesCS5B01G385300.1	Wheat	mitochondrion	86.67	81.25
HORVU5Hr1G094160.2	Barley	plastid	65.33	55.3
Os03t0741700-00	Rice	cytosol	24.53	47.92
Bra022807.1-P	Field mustard	cytosol	7.73	41.43
KXG37592	Sorghum	mitochondrion, nucleus	45.87	35.25
AT2G30580.1	Thale cress	nucleus	37.87	33.81
Zm00001d013303_P001	Maize	nucleus	34.67	33.42
CDY47131	Canola	nucleus	37.07	33.33
CDY10748	Canola	nucleus	36.8	32.78
CDX97807	Canola	nucleus	35.73	32.21
KRG95629	Soybean	nucleus	36.53	32.01
CDY29659	Canola	nucleus	35.73	31.83
Bra018304.1-P	Field mustard	nucleus	36.53	31.71
VIT_07s0141g00610.t01	Wine grape	nucleus	34.93	30.47
KRH67309	Soybean	nucleus	35.47	29.89
PGSC0003DMT400038984	Potato	nucleus	34.13	29.77
CDY23989	Canola	nucleus	33.87	29.6
Solyc09g065990.2.1	Tomato	nucleus	33.87	29.53
Solyc06g084040.2.1	Tomato	nucleus	33.6	29.23
KRH71326	Soybean	mitochondrion, nucleus	33.6	29.23
Solyc06g008600.2.1	Tomato	nucleus	32.53	29.19
KRH32110	Soybean	nucleus	33.33	29.14
AT1G06770.1	Thale cress	nucleus	32.27	28.74
KRG92687	Soybean	nucleus	32.53	28.18
Bra021651.1-P	Field mustard	nucleus	26.4	28.12
TraesCS5D01G450400.1	Wheat	nucleus	29.87	28.07
VIT_14s0081g00070.t01	Wine grape	nucleus	33.07	27.62
KRH34095	Soybean	nucleus	31.73	27.55
TraesCS5D01G069800.1	Wheat	nucleus	34.67	27.54
PGSC0003DMT400051660	Potato	nucleus	33.07	27.43
Bra015526.1-P	Field mustard	nucleus	16.8	25.71
VIT_05s0020g04730.t01	Wine grape	nucleus	31.73	25.11
TraesCS5D01G388500.1	Wheat	nucleus	34.4	24.81
CDY06664	Canola	nucleus	24.53	24.02
CDY61240	Canola	nucleus	11.47	23.89
PGSC0003DMT400013629	Potato	nucleus	18.13	23.21
KRG92425	Soybean	nucleus	25.87	22.77
Bra015525.1-P	Field mustard	cytosol	24.27	21.72
KRH34379	Soybean	nucleus	25.07	21.56
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.53	21.33
AT3G23060.1	Thale cress	nucleus	25.87	20.21
PGSC0003DMT400087291	Potato	nucleus	16.27	19.61
Bra001901.1-P	Field mustard	nucleus	23.2	18.79
CDX94870	Canola	nucleus	22.4	18.71
PGSC0003DMT400087288	Potato	plastid	8.27	18.67
CDX92974	Canola	cytosol	22.67	18.36
Solyc09g083300.1.1	Tomato	nucleus, plastid	12.0	16.85
PGSC0003DMT400010761	Potato	nucleus	21.87	16.6
PGSC0003DMT400015657	Potato	nucleus, plastid	15.47	14.68
Solyc09g083310.1.1	Tomato	nucleus	14.93	14.0

Protein Annotations

EnsemblPlants:TraesCS5D01G391100.1	EnsemblPlantsGene:TraesCS5D01G391100	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	PFAM:PF13923	PFscan:PS50089
ScanProsite:PS00518	SMART:SM00184	SUPFAM:SSF57850	MapMan:12.3.5.1.1.1	:	:

Description

No Description!

Coordinates

chr5D:-:459862560..459868148

Molecular Weight (calculated)

41726.2 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.497

Length

375 amino acids

Sequence
(BLAST)

001: MGHAPGVARV RRALLAPCVT CPLCDGYFRE ASAFTECGHT FCRECIMKKI DEEEIEACPV CDVALGITPE EKLRADISIQ AIRNYLFPPK AEVDAFEAPS
101: ITLPAKRKER SISSLVETPK MATQTTLTGR RTKAARRTIT SQTFSLSKLP NKSEDRDQMA EKASALKSTK MTTSANKKQN TVDISEDGKN RGTIDKEELE
201: KPLRSLVVAS AKKSQNPSSC PKESHKNKTT TEHTPRESPE ADSHDGITTQ VWFSLVTSPN QVEAKLLPQL EKNFYRIKDG TMRVSSILRL IMKKLELASD
301: DKVEILCHDE SVCPSTTLHG LLERWLSCKP KDEVLRPVGA PANEFVMELR YRRCPGSRPL CCTMKIASLP CHCST

Best Arabidopsis Sequence Match ( AT1G06770.1 )
(BLAST)

001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.