Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra021980.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23060.1 | Bra021980.1-P | AT5G45490.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92974 | Canola | cytosol | 89.42 | 89.42 |
| Bra022807.1-P | Field mustard | cytosol | 6.26 | 41.43 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 23.76 | 27.64 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 25.7 | 27.05 |
| AT3G23060.1 | Thale cress | nucleus | 27.86 | 26.88 |
| Os03t0741700-00 | Rice | cytosol | 11.02 | 26.56 |
| Bra018304.1-P | Field mustard | nucleus | 24.19 | 25.93 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 20.52 | 24.42 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 18.79 | 23.2 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 18.79 | 23.2 |
| Bra021651.1-P | Field mustard | nucleus | 17.28 | 22.73 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 16.85 | 22.67 |
| Zm00001d030985_P001 | Maize | nucleus | 22.68 | 22.06 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 18.79 | 21.75 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 24.19 | 21.71 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 24.41 | 21.69 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 23.76 | 21.65 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 22.03 | 21.52 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 21.81 | 21.4 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 21.6 | 21.19 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 23.76 | 21.15 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 21.38 | 20.97 |
| Zm00001d041405_P001 | Maize | nucleus | 21.6 | 20.58 |
| KXG37982 | Sorghum | nucleus | 22.68 | 20.35 |
| Zm00001d033322_P001 | Maize | nucleus | 22.89 | 20.15 |
| HORVU5Hr1G094160.2 | Barley | plastid | 19.01 | 19.86 |
| Zm00001d013303_P001 | Maize | nucleus | 16.41 | 19.54 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 20.3 | 19.26 |
| Bra015526.1-P | Field mustard | nucleus | 10.15 | 19.18 |
| Os03t0632800-01 | Rice | nucleus | 17.28 | 18.52 |
| OQU79520 | Sorghum | nucleus | 21.81 | 18.3 |
| Bra015525.1-P | Field mustard | cytosol | 15.98 | 17.66 |
| Zm00001d033967_P001 | Maize | nucleus | 14.25 | 17.28 |
Protein Annotations
| EnsemblPlants:Bra001901.1 | EnsemblPlants:Bra001901.1-P | EnsemblPlantsGene:Bra001901 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF70 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI0002540741 | UniProt:M4CCH1 | MapMan:12.3.5.1.1.1 | : | : |
Description
AT3G23060 (E=8e-036) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA03:+:19252437..19254350
Molecular Weight (calculated)
50938.5 Da
IEP (calculated)
8.142
GRAVY (calculated)
-0.513
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMEKKMTVL KAKRQDMKAC FSCPICNNLY DRATTISECL HTYIKNLFFY LYLGNTVCKR CIEDKLVVEN LKACPVCNVD LGVAPLDKLR SDNMWDELRI
101: KVFKQKPKSV KAAAATIETA SASLTYSRKK KTVTSPRASN SPEPTPDGAL ESEKLEEEME AVSLNQSSCA LVSNFRRRVR KNLAPKRNEN PLEPQQLHVE
201: SDNGFEIVLN FEQDNGLAGA LTSNGCIQKV PVSSDDLGKP LSNGKESNGT ALNVETVITT NGNTEEVTGE ANENNVLVSS ENVPKEVSGE KPKSNGVEKQ
301: ENVSTISAGK KGKGKAYAQR VLRPRKQGNM SSDGASEAAV SKEAEDKVEG SNKKVWLSLI AAANQNTERP LLPQISNAYI RTDGNLTVSY VKKYLANKLG
401: LQSEDQVEIW LRQEPVCSTQ KLHNLVDWWV QSTPVAERKS AMVGSSGAEF VMVLHYSGSH LCE
101: KVFKQKPKSV KAAAATIETA SASLTYSRKK KTVTSPRASN SPEPTPDGAL ESEKLEEEME AVSLNQSSCA LVSNFRRRVR KNLAPKRNEN PLEPQQLHVE
201: SDNGFEIVLN FEQDNGLAGA LTSNGCIQKV PVSSDDLGKP LSNGKESNGT ALNVETVITT NGNTEEVTGE ANENNVLVSS ENVPKEVSGE KPKSNGVEKQ
301: ENVSTISAGK KGKGKAYAQR VLRPRKQGNM SSDGASEAAV SKEAEDKVEG SNKKVWLSLI AAANQNTERP LLPQISNAYI RTDGNLTVSY VKKYLANKLG
401: LQSEDQVEIW LRQEPVCSTQ KLHNLVDWWV QSTPVAERKS AMVGSSGAEF VMVLHYSGSH LCE
001: MLTKVLSKEV KPCLACPICT NPFKDATTIS ECLHTFCRSC IRNKFINERV NACPVCNVNL GVFPLEKLRS DCTWQDLKLK IYRAMMESLK KAGPKTVAAS
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
Arabidopsis Description
Probable E3 ubiquitin protein ligase DRIPH [Source:UniProtKB/Swiss-Prot;Acc:Q9LS86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.