Factsheet for GSMUA_Achr4P17750_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P08690_001
GSMUA_Achr1P08716_001
GSMUA_Achr1P11070_001
GSMUA_Achr2P20290_001
GSMUA_Achr3P18940_001
GSMUA_Achr4P33210_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P00390_001
GSMUA_Achr8P16080_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	GSMUA_Achr4P33210_001	AT1G30860.1	21798944
AT2G30580.1	GSMUA_Achr7P00390_001	AT1G30860.1	21798944
AT2G30580.1	GSMUA_AchrUn_...	AT2G46550.1	21798944
AT2G30580.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr1P11070_001	AT4G13540.1	21798944
AT2G30580.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT2G30580.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944
AT3G23060.1	GSMUA_Achr1P08690_001	AT5G45490.1	21798944
AT3G23060.1	GSMUA_Achr1P08716_001	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03230_001	Banana	nucleus	67.61	59.77
GSMUA_Achr8P18360_001	Banana	cytosol	12.85	58.14
GSMUA_Achr9P10710_001	Banana	nucleus	52.19	51.01
VIT_07s0141g00610.t01	Wine grape	nucleus	47.3	42.79
PGSC0003DMT400038984	Potato	nucleus	46.27	41.86
Solyc09g065990.2.1	Tomato	nucleus	46.02	41.63
VIT_14s0081g00070.t01	Wine grape	nucleus	46.53	40.31
Solyc06g008600.2.1	Tomato	nucleus	43.19	40.19
Solyc06g084040.2.1	Tomato	nucleus	44.47	40.14
KRG95629	Soybean	nucleus	43.44	39.49
AT2G30580.1	Thale cress	nucleus	42.42	39.29
CDY47131	Canola	nucleus	41.39	38.61
CDY29659	Canola	nucleus	41.65	38.48
KRH34095	Soybean	nucleus	42.67	38.43
KRG92687	Soybean	nucleus	42.67	38.34
CDX97807	Canola	nucleus	40.87	38.22
PGSC0003DMT400051660	Potato	nucleus	44.22	38.05
KRH67309	Soybean	nucleus	43.44	37.98
Os03t0632800-01	Rice	nucleus	41.9	37.73
CDY10748	Canola	nucleus	40.62	37.53
AT1G06770.1	Thale cress	nucleus	40.36	37.29
Bra018304.1-P	Field mustard	nucleus	40.62	36.57
TraesCS5A01G378600.1	Wheat	nucleus	47.56	36.42
CDY23989	Canola	nucleus	40.1	36.36
HORVU5Hr1G093720.3	Barley	nucleus	48.33	36.08
TraesCS5B01G382100.1	Wheat	nucleus	47.56	35.85
GSMUA_Achr8P18370_001	Banana	mitochondrion, nucleus	30.59	35.84
TraesCS5D01G388500.1	Wheat	nucleus	47.81	35.77
KRH32110	Soybean	nucleus	39.33	35.66
Bra015526.1-P	Field mustard	nucleus	22.36	35.51
KXG37982	Sorghum	nucleus	46.53	35.08
KRH71326	Soybean	mitochondrion, nucleus	38.56	34.8
Zm00001d030985_P001	Maize	nucleus	41.9	34.24
Os12t0600200-03	Rice	cytosol, nucleus	30.08	34.01
VIT_05s0020g04730.t01	Wine grape	nucleus	41.39	33.97
TraesCS5D01G069800.1	Wheat	nucleus	41.13	33.9
TraesCS5A01G058000.1	Wheat	nucleus	40.87	33.69
Zm00001d041405_P001	Maize	nucleus	41.9	33.54
HORVU5Hr1G014430.6	Barley	nucleus	40.62	33.33
Zm00001d033322_P001	Maize	nucleus	44.99	33.27
TraesCS5B01G065600.1	Wheat	cytosol	39.85	32.84
Bra021651.1-P	Field mustard	nucleus	29.31	32.39
PGSC0003DMT400013629	Potato	nucleus	22.62	30.03
CDY06664	Canola	nucleus	28.79	29.24
CDY61240	Canola	nucleus	13.37	28.89
OQU79520	Sorghum	nucleus	40.1	28.26
Bra015525.1-P	Field mustard	cytosol	29.56	27.45
KRG92425	Soybean	nucleus	25.96	23.71
KRH34379	Soybean	nucleus	26.22	23.39
CDX94870	Canola	nucleus	23.91	20.71
Bra001901.1-P	Field mustard	nucleus	24.42	20.52
PGSC0003DMT400087291	Potato	nucleus	16.2	20.26
CDX92974	Canola	cytosol	23.91	20.09
AT3G23060.1	Thale cress	nucleus	23.91	19.38
PGSC0003DMT400010761	Potato	nucleus	22.62	17.81
Solyc09g083310.1.1	Tomato	nucleus	16.97	16.5
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	6.17	16.0
Solyc09g083300.1.1	Tomato	nucleus, plastid	10.8	15.73
PGSC0003DMT400015657	Potato	nucleus, plastid	14.4	14.18
PGSC0003DMT400087288	Potato	plastid	3.86	9.04
Bra022807.1-P	Field mustard	cytosol	1.54	8.57

Protein Annotations

EnsemblPlants:GSMUA_Achr4P17750_001	EnsemblPlants:GSMUA_Achr4T17750_001	EnsemblPlantsGene:GSMUA_Achr4G17750_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	PFAM:PF13923
PFscan:PS50089	ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000296F3AA
UniProt:M0SPT8	MapMan:12.3.5.1.1.1	:	:	:	:

Description

Putative E3 ubiquitin protein ligase DRIP2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17750_001]

Coordinates

chr4:+:17983134..17988610

Molecular Weight (calculated)

42969.7 Da

IEP (calculated)

10.297

GRAVY (calculated)

-0.566

Length

389 amino acids

Sequence
(BLAST)

001: MGTSETEEAE APTAGPAQVV RVKRERLVAR MTCPICHKLL RDATTISECL HTFCRKCIYE KLNEEEADCC PVCNIPLGCV PVEKLRADHN LQDLRAKIFP
101: LKKKKAGAPD TVPSIELPVK RKEISLSSLV VNSPRIATQT GLTGRRKKVV GSRAATIHGR NPATGEFNKN ENDIVDKSAK KSSSNGNPSR LIPSRKQASS
201: GAEISNNLAN KNIENGGKPL VDKAELWKPL NCLVEAANRT KSFRSSPHKS VIKAEEKNVS DSEVNINKTR VEEHIHKSKV KDENFDNVKM PPMTAKARRI
301: KGVGQKRRKL ANSIQMLPDA ANAQSDRRIT PLWFSLVASF DQTGDSSLPQ ISTSYLRIKD GNVPVSYIQK YLVVKLNLVS EAEVSFSQK

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.